Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F05
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   2.4  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   2.4  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.2  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 301 IEQKTE-WSE--RKQQMAKEYRVKVEKELREICYDV 399
           +E K E W     K    K+YRVK E+E +++  +V
Sbjct: 95  VENKPELWDSLANKYDPDKKYRVKFEEEAKKLGINV 130


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 301 IEQKTE-WSE--RKQQMAKEYRVKVEKELREICYDV 399
           +E K E W     K    K+YRVK E+E +++  +V
Sbjct: 95  VENKPELWDSLANKYDPDKKYRVKFEEEAKKLGINV 130


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
 Frame = +1

Query: 43  ITVLPFQQWHQ*NQYLP-----SSTMSVDKEELV--QRAKLAE----QAERYDDMAAAMK 189
           I   PF+QW++ +  LP      + ++  +EE++  +R+K AE      +R+  +  A++
Sbjct: 104 IDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALE 163

Query: 190 EVTETG 207
           E   TG
Sbjct: 164 EQFATG 169


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 269 PDGHHGESFPLL 304
           P GHH  S PLL
Sbjct: 516 PSGHHASSAPLL 527


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +1

Query: 304 EQKTEWSERKQQMAKEYRVKVEKELREICYDVLCLLDKHLIPKASNPESKVFYLKMKGDY 483
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 484 YRY 492
           + Y
Sbjct: 500 FDY 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,607
Number of Sequences: 438
Number of extensions: 2822
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)