Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_F04
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 157 9e-40
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 151 5e-38
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 28 0.71
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.71
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 0.94
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 0.94
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 27 0.94
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 1.6
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 26 2.2
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 3.8
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 25 3.8
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 5.0
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 5.0
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 6.7
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 8.8
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 8.8
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 24 8.8
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 157 bits (380), Expect = 9e-40
Identities = 80/124 (64%), Positives = 94/124 (75%), Gaps = 1/124 (0%)
Frame = +1
Query: 58 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 237
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 238 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 414
+T+FGGG+STGFALIYD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV
Sbjct: 60 LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVF 119
Query: 415 GTKK 426
GT K
Sbjct: 120 GTGK 123
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 151 bits (366), Expect = 5e-38
Identities = 75/124 (60%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Frame = +1
Query: 58 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 237
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 238 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 414
+T++GGG++TGFALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV
Sbjct: 60 LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVF 119
Query: 415 GTKK 426
GT K
Sbjct: 120 GTGK 123
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.9 bits (59), Expect = 0.71
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 298 DLAKKFEPKHRLARHGLYEKKRPTR--KQRKERKNRMKKVRGTKKSK 432
D KK + +L ++KR R + +K K+ +KKV GTKK K
Sbjct: 155 DKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLKKVSGTKKVK 201
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 304 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 408
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.71
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 310 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 408
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 27.5 bits (58), Expect = 0.94
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 68 PSLIFDYFRDFGVKTHVSPTS 6
P L+FDYF D G K HV+P +
Sbjct: 53 PDLLFDYFID-GHKIHVNPNA 72
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 0.94
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 175 EIREKLAKMYKVTPDVVFVFGFKTNFGG 258
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 27.5 bits (58), Expect = 0.94
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 246 RLETEHENY-VWRHFVHFSELFTDLSFADGRFSWMQDIAYHL 124
RLE EH V R+ L +F D R+ W Q+I+ L
Sbjct: 261 RLEVEHPGEEVLRNNRILGRLMPSRAFGDARYKWSQEISERL 302
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 350 MKRRGRHANSVRNVRTE*RRYEVPRN 427
+KRR R N++R + E RRY +P++
Sbjct: 28 VKRRKRLFNAIRKLWNERRRYRMPKD 53
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 418 YLVPSSFCSYVPYAVCVSASSFHTGRDERVCVLAQTSL 305
Y VP + A+ V A H G+D+ C LA+ L
Sbjct: 65 YDVPFLINDRIDVALAVGADGVHIGQDDMDCALARKIL 102
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVRGTKKS 429
E+ +P ++ +E +NR+ ++RGT S
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGTPMS 115
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 355 KKRPTRKQRKERKNRMKKVRGTKKSK 432
+K+ +K++KE+K + +K KKS+
Sbjct: 449 RKKEAKKEKKEKKEKKEKKEKKKKSE 474
>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 423 LGTSYLLHSVLTFLTLFACRPLLFIQAVTSESVFWL 316
L TS+ S+L L + PLLF+ + S S + L
Sbjct: 17 LNTSFSFSSLLCILCFYKDGPLLFLYSPLSASYYCL 52
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 273 SGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQDI 136
+G +A E HENY H E++ D + R ++ DI
Sbjct: 60 NGMYAGAENHNVENHENYTMVGHDHMEEVYGDDLVNEPRIAYSSDI 105
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 332 SLCFGSNFFAKSSVS*IKANPVDLP 258
S CF +N F+KSS+ I +N +P
Sbjct: 766 SFCFINNLFSKSSLKAISSNDSIVP 790
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 6.7
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 310 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 411
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 349 TGRDERVCVLAQTSLLSLACRRLKQ 275
+G DER V L+ CRRLKQ
Sbjct: 519 SGTDERCLVCLSNFELNDECRRLKQ 543
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 317 SNFFAKSSVS*IKANPVDLPPPKFVLKPNTKTTS 216
SN+ A S V + N +DLPPP + + K S
Sbjct: 135 SNWRADSGVVQVIDNIIDLPPPALEILSSEKDFS 168
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 107 LLVINLRVRIVAVPSLIFDYFRDFGVKTHVSPTS 6
++V N++ +V++ SL+F FR G T +P S
Sbjct: 513 VIVNNIKYEVVSL-SLLFTVFRTMGGSTVQAPNS 545
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,797
Number of Sequences: 5004
Number of extensions: 35711
Number of successful extensions: 139
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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