Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_F04
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 173 7e-44
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 169 8e-43
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 132 9e-32
01_06_0355 + 28657833-28660665,28660762-28661126 31 0.41
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 29 1.2
01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495 29 2.2
07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423 28 3.8
11_04_0350 - 16658497-16659015 27 5.0
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 27 5.0
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 5.0
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674... 27 6.6
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 6.6
12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313,916... 27 8.7
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 27 8.7
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 173 bits (420), Expect = 7e-44
Identities = 80/120 (66%), Positives = 99/120 (82%), Gaps = 1/120 (0%)
Frame = +1
Query: 76 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 252
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 253 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 432
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG KK+K
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTK 130
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 169 bits (411), Expect = 8e-43
Identities = 79/120 (65%), Positives = 98/120 (81%), Gaps = 1/120 (0%)
Frame = +1
Query: 76 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 252
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 253 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 432
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG KK+K
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTK 130
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 132 bits (320), Expect = 9e-32
Identities = 76/148 (51%), Positives = 96/148 (64%), Gaps = 29/148 (19%)
Frame = +1
Query: 76 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 252
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 253 GGGKSTGFALIYDTLDLAKKFEPKHRLAR-------HGLYEKK----------------- 360
GGGKSTGF LIYD LD AKK+EPK+RL R +G + +
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRVQLLSVGNGCFVSRGVLGIPCEVRFGNLNGL 130
Query: 361 -RPTRKQRK---ERKNRMKKVRGTKKSK 432
K RK ERKNR KK+RG KK+K
Sbjct: 131 ATKVEKSRKQMKERKNRAKKIRGVKKTK 158
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 31.1 bits (67), Expect = 0.41
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 236 PNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVINLRVRIVA 72
PN S +TL L + + L +GFP CK H + + + LL + L I+A
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLLKVVLIPSILA 724
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVRGTKKSK 432
+KK+ +K++K++KN+ KK + KK K
Sbjct: 75 KKKKKKKKKKKKKKNKKKKKKKKKKKK 101
>01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495
Length = 239
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 247 NFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLY----EKKRPTRKQRKER-KNRMKKV 411
NFGGG + L+Y L+ +++++ G Y ++ + +RKE+ R K
Sbjct: 100 NFGGGAAVAVGLLYRVLE-ESSHNKRNKISESGAYTSSSNQEIEEKTERKEKCLERQKAA 158
Query: 412 RGTKKSK 432
+ KK K
Sbjct: 159 KQRKKGK 165
>07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423
Length = 266
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 340 HGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 432
H EKK+ ++K+RK R KK + KKSK
Sbjct: 224 HKKKEKKKEKSSEKKDRKERRKK-KDKKKSK 253
>11_04_0350 - 16658497-16659015
Length = 172
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVRGTKK 426
+KK+ +K++K++K + KKVR T++
Sbjct: 36 KKKKKKKKKKKKKKKKKKKVRYTQE 60
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +1
Query: 289 DTLDLAKKFEPKHRLA-RHGLYEK-KRPTRKQ--RKERKNRMKKVRGTKKSK 432
D+ DL+ + + R RH +K KR RK+ R+ERK R + + +KSK
Sbjct: 260 DSSDLSSSSDDRRRRRKRHSKKDKHKRGKRKRDRRRERKRRKRDRKSKQKSK 311
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 343 GLYEKKRPTRKQRKERKNRMKK 408
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>11_06_0618 +
25565780-25566064,25566855-25567046,25567144-25567416,
25567636-25567738,25568273-25568391,25568615-25568782,
25568908-25569386,25569742-25569850,25569905-25570070,
25571405-25571433
Length = 640
Score = 27.1 bits (57), Expect = 6.6
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Frame = -2
Query: 383 LRCLRVGLFFSYRP*RASLCFGSNFFAKSSVS*IKANPVDLPPPKFVLKPNTKTTSGVTL 204
LR LR+ +FF+ +P L FG + +S + I+ + + P F + K+T L
Sbjct: 123 LRYLRLCMFFAKKPYEVFLEFGG--YGQSDIL-IRKSKARVMKPSFTI-VRDKSTKSFIL 178
Query: 203 YILASFSRISVLLTVGFPGCKTSHTICL---RANNLLVINLRVRIVAVPSLIFD 51
+I + S + LT H + L R +N++V ++ +VA I D
Sbjct: 179 FIRGATS-VKDRLTAATAAEVPFHHVVLKEGRVSNVVVGHVHCGMVAAARWIAD 231
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 292 TLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTK-KSK 432
+LD + + +H+ + +K R + + K +K + +K RGTK KSK
Sbjct: 207 SLDTSSSSDHRHKRRKSSKKDKHRSAKGKSKHKKTK-RKSRGTKRKSK 253
>12_01_0924 +
9161155-9161646,9161748-9162164,9162250-9162313,
9162621-9163030
Length = 460
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +1
Query: 7 EVGDTCVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSK 171
EV F P ++K K T+K R R ++ +L P KP + K
Sbjct: 332 EVDSMAYFPPPAKKSKKAQSSPPQHETKKKAVGRGRGRGKVEASLLVPNKPNLGK 386
>06_03_0785 -
24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 26.6 bits (56), Expect = 8.7
Identities = 25/102 (24%), Positives = 50/102 (49%)
Frame = +1
Query: 70 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 249
+++I +F+ R R+++V +L K E R K A+ + +V+ + G N
Sbjct: 169 SSSISIGEFVVGRQKEREELVHQLLEQS----DKPESRSKGARSTSL--EVITIVG---N 219
Query: 250 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRK 375
G GK+T LIY+ + F+ + + +++K R T++
Sbjct: 220 GGIGKTTLAQLIYNDKRIEDNFDMRAWVCVSHVFDKVRITKE 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,683,065
Number of Sequences: 37544
Number of extensions: 224747
Number of successful extensions: 707
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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