Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F02
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   234   5e-63
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   234   5e-63
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    49   4e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.19 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.3  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   3.0  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   7.0  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    24   9.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    24   9.3  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  234 bits (572), Expect = 5e-63
 Identities = 107/141 (75%), Positives = 123/141 (87%)
 Frame = +1

Query: 22  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 201
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 202 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 381
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 382 KVVKVANVSLLALYKEKKERP 444
           KVVKVA V L AL+ EKKE+P
Sbjct: 121 KVVKVAGVGLSALFHEKKEKP 141


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  234 bits (572), Expect = 5e-63
 Identities = 107/141 (75%), Positives = 123/141 (87%)
 Frame = +1

Query: 22  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 201
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 202 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 381
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 382 KVVKVANVSLLALYKEKKERP 444
           KVVKVA V L AL+ EKKE+P
Sbjct: 121 KVVKVAGVGLSALFHEKKEKP 141


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +1

Query: 148 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 327
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 328 AGFGRKGHAVGDIPGVRFKVVK 393
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 428  SLYRARSDTFATLTTLNLTPGMSPTAWP 345
            S Y+ + DT+AT  TLN      PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -1

Query: 428 SLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSM 300
           ++Y + + +F   T ++++ G S     L P PA++TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -3

Query: 198 GFNANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 19
           GF  +++ +     R   E +RLP     G  + +V    L T +  L++    P + H 
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409

Query: 18  D 16
           D
Sbjct: 410 D 410


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 277 PRDGCLNHIEENDEVLVAGFGRKGHAVG 360
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 85  WADKEFKKAHMGTRWKANPFGGASHAKGIV 174
           W D EF   H   ++   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/55 (21%), Positives = 33/55 (60%)
 Frame = -1

Query: 404 TFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMS 240
           TF++++++  +   SP++  L  + ++ +S+FSS     PS  +++++    ++S
Sbjct: 572 TFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILS 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,847
Number of Sequences: 5004
Number of extensions: 39900
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)