Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_F01
         (235 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0264 + 19537582-19537919,19539670-19539826,19539939-195400...    27   2.8  
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898...    26   3.7  
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597...    26   3.7  
12_01_0452 - 3566352-3567602,3568840-3569389,3570169-3570203           26   4.9  
09_04_0164 + 15265878-15268701,15268782-15269200                       26   4.9  
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688     26   4.9  
09_03_0169 - 13010909-13012033                                         25   8.6  
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522...    25   8.6  

>05_04_0264 +
           19537582-19537919,19539670-19539826,19539939-19540092,
           19540281-19540417
          Length = 261

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 230 RVHGTAGRQKLSVALWAQSSSDVMPP 153
           R  GTAGR++L V +   SS+   PP
Sbjct: 60  RCRGTAGRRRLQVVVAMSSSAPPPPP 85


>06_01_1096 -
           8988463-8989167,8989335-8989361,8989560-8989648,
           8989830-8990039,8990877-8991047,8991595-8991777,
           8991886-8991969,8992067-8992178
          Length = 526

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 232 TAYMVRQADRSCQLLC---GHSQVRTSCLHNDVC 140
           T + +R    SC LL    G+  +R   LHND C
Sbjct: 210 TDFEIRYISSSCSLLVIDRGNQAIREIALHNDDC 243


>01_06_0515 -
           29959149-29959253,29959510-29959633,29959702-29959793,
           29959921-29960003,29960573-29960654,29960707-29960784,
           29960875-29960967,29961647-29961734,29961822-29961991
          Length = 304

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 190 LCGHSQ-VRTSCLHNDVCIN*YFC 122
           LCG  Q VR  C+   VC+  YFC
Sbjct: 111 LCGTEQEVRQVCISCGVCMGKYFC 134


>12_01_0452 - 3566352-3567602,3568840-3569389,3570169-3570203
          Length = 611

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = +1

Query: 97  CSIYLSVISKNTNLYKHHYGGMTSELDCAHKATDNFCRPA 216
           C+    +++ +    + H+ G   +LDC H+     C+P+
Sbjct: 24  CANLEVILNADAKNVEEHHEGDCQKLDCCHQPKPLVCQPS 63


>09_04_0164 + 15265878-15268701,15268782-15269200
          Length = 1080

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = +1

Query: 25  HSTSDEVVSSFVATVRL*KFLHIKCSIYLSVISKNTNL 138
           +S +D++ +S ++ +R  ++LH+  +++ +    NTNL
Sbjct: 322 NSLADDLPTSIISGLRNLRYLHLSNNVHFASGDGNTNL 359


>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
          Length = 761

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 201 VVSCFVGTVKFGRHASIM 148
           +VSCF+  VK GRH  ++
Sbjct: 649 LVSCFITAVKAGRHQELL 666


>09_03_0169 - 13010909-13012033
          Length = 374

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 228 RTWYGRPTEVVSCFVGTVKFGRHASIMM 145
           R W   PT+V+   +G++++  H S+ +
Sbjct: 8   RGWSSLPTDVLVLILGSLRWSSHPSVAL 35


>02_05_1158 -
           34550049-34551241,34551354-34551521,34551847-34552231,
           34552245-34552772
          Length = 757

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 201 VVSCFVGTVKFGRHASIM 148
           +VSCF   VK GRH  ++
Sbjct: 645 LVSCFTTAVKVGRHQELL 662


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,391,089
Number of Sequences: 37544
Number of extensions: 100106
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)