Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E24
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.3  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   3.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.1  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    26   4.1  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.4  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    25   7.2  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   7.2  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   7.2  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    25   9.5  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    25   9.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -2

Query: 283 NVTNYKLTTMIMYVYNYTNMKSGFVQQSLLLS---KFCSDFTHL 161
           N+  Y+L   + Y++N+    +G  +    L    + C DF HL
Sbjct: 591 NIDAYQLADGLHYIFNHVGQLTGMYRYKYRLMRQIRACKDFKHL 634


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 153  SAARPERRNASCARVRRGRCNAILNRAVEPRSRTSRTPCYLLSVHL 16
            S A  ++R     RV++G C  +  R  E +    +TP  +L   L
Sbjct: 912  SRAACQQRRGRAGRVKKGICYKLYTRGFEEKGMLGQTPPEVLRTAL 957


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 178 SDFTHLPWQCGATRA*KRVVCPGTPWP 98
           + F  LP  CG TR    V C GTP P
Sbjct: 615 ASFEELPCTCGRTRLYPPVAC-GTPIP 640


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -2

Query: 130 KRVVCPGTPWPLQRHFKSRRRAAVSHITHTVLPSLS 23
           +R     TPW ++  F    +  V    HT++P+++
Sbjct: 41  RRASMQETPWTIKDSFNVETKDVVQRCIHTLIPTVN 76


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 474 QD*KSYIHDIGTNCVYTQIAI 412
           +D KS+IHD+   C ++ +A+
Sbjct: 117 KDWKSFIHDVNMACSFSDVAL 137


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 136 LWSRRTATASG*NLNKTWTRAAIVAR 213
           +W RR+      NL KTW +  + AR
Sbjct: 40  VWKRRSDGVHILNLGKTWEKLVLAAR 65


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 121 RRVSTLWSRRTATASG*NLNKTWTRAAIVAR 213
           R  + +W RR+      NL KTW +  + AR
Sbjct: 36  RMENYVWKRRSDGIHIINLGKTWEKLVLAAR 66


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 253 IMYVYNYTNMKSGFVQQSLLLSK 185
           I+YV   ++ KSGF  QSL+L++
Sbjct: 928 ILYVLTDSDHKSGFKLQSLILAR 950


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 259 TMIMYVYNYTNMKSGFVQQSLLLSKFCSDFTHL 161
           T I+Y    TN     ++ +LL + FCS   HL
Sbjct: 20  TTILYFTIGTNFPHDELRHNLLSTLFCSSMLHL 52


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 114 GHTTRFYALVAPHCHGKWV 170
           GHT    A +A HC GKW+
Sbjct: 81  GHTNNVTA-IAFHCDGKWL 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,792
Number of Sequences: 5004
Number of extensions: 36994
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)