Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E24
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1052 + 23598547-23600181                                         31   0.44 
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783     29   3.1  
05_05_0057 + 21995018-21997006                                         28   5.5  
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    27   7.2  
05_07_0113 + 27767826-27768284                                         27   9.6  

>07_03_1052 + 23598547-23600181
          Length = 544

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 203 IAALVQVLFRFHPLAVAVRRDQSVETRRVPGYAVA 99
           IA+L +V F FHPLA++  + ++     +PG A+A
Sbjct: 340 IASLCKVPFEFHPLAISGSKVEAAHLGVIPGEALA 374


>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
          Length = 1439

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -3

Query: 159 RGSAARPERRNASCARVRRGRCNAILNRAVEPRSRTSRTP 40
           RGS  R     AS  R RR R  +   RA  PR+ +SR P
Sbjct: 67  RGSGRRAAPVVASRRRRRRSRSRSRSPRAARPRAESSRRP 106


>05_05_0057 + 21995018-21997006
          Length = 662

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 43  CA*CARPRLYGAI*NGVAAATAYPGTRRVS---TLWSRRTATASG 168
           CA C R RL G +    AAA A PG R  S   +L+SR    A G
Sbjct: 32  CAACLRERLAG-LEASTAAAAAAPGRRSTSAIRSLFSRPFVAAGG 75


>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/63 (19%), Positives = 27/63 (42%)
 Frame = -3

Query: 510 RPPFCWSLVTLIQD*KSYIHDIGTNCVYTQIAIXXXXXXXXXXNHKNIFTINLIKTENKN 331
           RPP+ W++  +++   +Y   +    + + +              + +   NL+KT N+ 
Sbjct: 420 RPPWGWAVAQVLKSCCAYSSGVTAAILLSDLFQSWTEQSKSLTAKRKVELTNLLKTRNRR 479

Query: 330 RHL 322
           R L
Sbjct: 480 RRL 482


>05_07_0113 + 27767826-27768284
          Length = 152

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 51  MCETAALRRDLKWRCSGHGVPGHTTR 128
           +C+T  +RR+ +W   G G+  H TR
Sbjct: 106 ICDTP-VRRETRWAAEGEGIALHVTR 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,571,369
Number of Sequences: 37544
Number of extensions: 252341
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)