Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E24
         (539 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC042877-1|AAH42877.1|  259|Homo sapiens RPE-spondin protein.          46   6e-05
AY040546-1|AAK83466.1|  298|Homo sapiens RPE-spondin protein.          46   6e-05

>BC042877-1|AAH42877.1|  259|Homo sapiens RPE-spondin protein.
          Length = 259

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 24  LREGNTVCVMCETAALRRDLKWRCSGHGVP---GHTTRFYALVAPHCHGKWVKSEQNLDK 194
           LREG TVCV C+  A+   +  RCSG G+      T  + A+  P C G W K  + +D+
Sbjct: 190 LREGYTVCVDCQPPAM-NSVSLRCSGDGLDSDGNQTLHWQAIGNPRCQGTW-KKVRRVDQ 247

Query: 195 SSDCCTKPDFIFV 233
            S C     FIF+
Sbjct: 248 CS-CPAVHSFIFI 259


>AY040546-1|AAK83466.1|  298|Homo sapiens RPE-spondin protein.
          Length = 298

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 24  LREGNTVCVMCETAALRRDLKWRCSGHGVP---GHTTRFYALVAPHCHGKWVKSEQNLDK 194
           LREG TVCV C+  A+   +  RCSG G+      T  + A+  P C G W K  + +D+
Sbjct: 229 LREGYTVCVDCQPPAM-NSVSLRCSGDGLDSDGNQTLHWQAIGNPRCQGTW-KKVRRVDQ 286

Query: 195 SSDCCTKPDFIFV 233
            S C     FIF+
Sbjct: 287 CS-CPAVHSFIFI 298


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,949,267
Number of Sequences: 237096
Number of extensions: 1353566
Number of successful extensions: 6512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6512
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)