Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E24
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.      27   6.5  
AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical ...    27   6.5  

>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
           protein R17.3 protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 24  LREGNTVCVMCETAALRRDLKWRCSGHGVPGHTTRFYALVAPH-CHGKWVK 173
           L EG+ +C  C+  A       RC+     G    F+ L+ P  C+G W +
Sbjct: 369 LSEGSVMCAECQPEATYHRNNGRCASDLEDG-DQGFWKLIGPQSCNGIWTR 418


>AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -3

Query: 246 MFIIIQI*NPVSCNNRCSCPSFVQISPTCRGSAAR 142
           + +++ +   +SC + C CP+  + +  C+GS+ R
Sbjct: 6   LILLVLVSGVISCQSGCKCPT--KTTAVCKGSSLR 38


>AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical
           protein Y71F9B.8 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -3

Query: 246 MFIIIQI*NPVSCNNRCSCPSFVQISPTCRGSAAR 142
           + +++ +   +SC + C CP+  + +  C+GS+ R
Sbjct: 6   LILLVLVSGVISCQSGCKCPT--KTTAVCKGSSLR 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,686,922
Number of Sequences: 27780
Number of extensions: 221774
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)