Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E23
         (233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    23   4.1  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    23   4.1  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    22   9.4  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    22   9.4  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 64  YDDFVKHAEEVQKKVHE 114
           YDDF    EEV+++V E
Sbjct: 187 YDDFEDEEEEVEEQVEE 203


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 6   RRRQHGSDLTETGAKTESGIR 68
           R+  HGS LT+TG   +  ++
Sbjct: 42  RKSNHGSSLTDTGESDQLSLK 62


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 10  GVNMDQTSQKLAP 48
           GVN DQT Q  AP
Sbjct: 293 GVNADQTQQPTAP 305


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 8   AASTWIRPH 34
           AA TW+RPH
Sbjct: 915 AACTWLRPH 923


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,337
Number of Sequences: 5004
Number of extensions: 7011
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)