Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E23
         (233 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306...    27   1.6  
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974...    25   6.5  
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745...    25   8.6  

>05_05_0352 +
           24328117-24328303,24328451-24328559,24330634-24330692,
           24331139-24331220,24331361-24331481,24331751-24332278,
           24332724-24332831,24332934-24333131,24334043-24334234,
           24336116-24336199,24336385-24336525,24336683-24336748,
           24336880-24337047,24337134-24337463,24337568-24337666
          Length = 823

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 58  AAYDDFVKHAEEVQKKVHEAATKQ*RALIARR 153
           A Y D  K+ EE+Q  + E   +Q  AL+ +R
Sbjct: 175 ALYPDIDKYEEEIQASIAETFRRQSEALVKKR 206


>09_04_0038 -
           13996505-13996836,13997047-13997077,13997307-13997420,
           13997546-13997686,13997787-13997851,13997943-13998039,
           13998096-13998257,13998360-13998473,14001263-14001311,
           14001967-14002047,14003504-14003561,14003671-14004031,
           14004129-14004213,14004320-14004591,14004712-14004914,
           14005419-14005494
          Length = 746

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 178 SCIIICNKHF 207
           +C+I+CNKHF
Sbjct: 480 NCVILCNKHF 489


>03_05_0261 -
           22470565-22470714,22472101-22474270,22474368-22474540,
           22474763-22474924,22476420-22476560
          Length = 931

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 13  VNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHEA 117
           V++ Q  +++  +L +     VKH  +++K+VHEA
Sbjct: 383 VDVLQPKKEVTSELPSLDKFLVKHLSKLEKEVHEA 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,666,048
Number of Sequences: 37544
Number of extensions: 49042
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)