Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E23
         (233 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   4.6  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    19   8.0  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    19   8.0  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 172 YNSCIIICN 198
           Y++CI +CN
Sbjct: 52  YDNCITVCN 60


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 67  DDFVKHAEEVQKKVHEAATKQ*RALIARR 153
           DDF +   E+ ++    A  +   ++AR+
Sbjct: 86  DDFTEDVHEIIEQCVSKAADEDECMVARK 114


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 67  DDFVKHAEEVQKKVHEAATKQ*RALIARR 153
           DDF +   E+ ++    A  +   ++AR+
Sbjct: 86  DDFTEDVHEIIEQCVSKAADEDECMVARK 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,188
Number of Sequences: 438
Number of extensions: 454
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3772710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)