Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E22
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    57   7e-10
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   2.5  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   2.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.4  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   4.4  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   4.4  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   4.4  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   4.4  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   4.4  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    24   5.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    24   7.6  

>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 57.2 bits (132), Expect = 7e-10
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
 Frame = +3

Query: 30  NYKYRDALKRNYNLNQYWVEINIEDLSSFDEILAEKLYKKPTEHLPIXXXXXXXXXXXXX 209
           ++ YR  L+ N  + QY + I++  L S++E LA  L  +PT+ LP+             
Sbjct: 46  DFIYRTQLRDNLVVKQYMLNIDLRHLISYNEDLAHLLLSQPTDILPLFESAVTTVAKRLL 105

Query: 210 XPRPE-GEEKVEDIQVILSSDAHSSSLRELKSETVSRLVKIPGIVI 344
               E     +   QV L  DA+   +R L +  +S+LV++PGI+I
Sbjct: 106 YRSQENASTNIPTCQVTLRYDANILPIRNLTASHISKLVRVPGIII 151


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 325 LTNLDTVSDLSS--LKLDECASEDRMTCISS 239
           +  L+ +S++ S  L  +ECAS+D+  C+ S
Sbjct: 358 MEELELLSEVLSTFLSFNECASQDKKNCVFS 388


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 276 SSSLRELKSETVSRLVKIPGIV 341
           ++SLRE+K +   RLV  PGIV
Sbjct: 310 TTSLREVKLDNKLRLVDSPGIV 331


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 191 LFCCFL*YRQMFSRFFIKFLCQYFIKTG*VFYIYFN--PILI*IVVSFQCISVFI 33
           LF  FL +   FS F   FL  +F+    +F +YF+  PIL  +   F C+ VF+
Sbjct: 118 LFFFFLLFFLSFS-FSFSFL--FFLSQ--IFIVYFSSFPILHFLFFFFLCVCVFL 167


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 328 ILTNLDTVSDLSSLKLDECASEDRMTCISSTFSSPS 221
           +L N D  S   +  +DE A  D  +  S T++SP+
Sbjct: 304 VLLNFDRTSAQRTRIIDEAADFDPTSLASDTWASPA 339


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 147 FYKVSLPVFHQNWISLLYLFQPNIDLNCSFV 55
           + K++LPVFH  +         NI  +CS V
Sbjct: 82  YVKLALPVFHIGYFKATLTILQNICKDCSSV 112


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 24  NFNYKYRDALKRNYNLNQYWVEINIEDLSSFDEILAEKL 140
           +F Y++    K N+NL     ++   DL+  D     KL
Sbjct: 66  DFAYRFSTEAKANFNLTNMVFDLENYDLTDLDNFDRSKL 104


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 222  EGEEKVEDIQVILSSDAHSSSLRELKSETVS 314
            EG++ VE++    +SDA  S   E +SE  S
Sbjct: 939  EGDDSVEEVSEYEASDADPSDEEEEESEEYS 969


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 117 QNWISLLYLFQPNIDLNCSFVSVHL 43
           ++W++ +YL+ P  D +   + +HL
Sbjct: 63  KDWVTTVYLWDPTCDTSSIGLQIHL 87


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 90  INIEDLSSFDEILAEKLYKKPTEHLPI 170
           IN E++S ++  L EKL++   EHLPI
Sbjct: 293 INQENISLWETEL-EKLHQLKKEHLPI 318


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 258  LSSDAHSSSLRELKSET 308
            L SDAH+SS+ E  S T
Sbjct: 1333 LMSDAHASSMSEFSSST 1349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,868
Number of Sequences: 5004
Number of extensions: 21500
Number of successful extensions: 75
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)