Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E22
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1080 - 33955034-33955117,33955199-33955300,33955381-339555...    55   2e-08
02_05_0933 + 32846658-32846729,32847038-32847133,32847243-328474...    27   5.2  
10_05_0060 + 8682253-8682305,8682933-8683162,8684448-8684683,868...    26   6.9  
09_04_0250 + 16074966-16075418                                         26   6.9  
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364...    26   6.9  

>02_05_1080 -
           33955034-33955117,33955199-33955300,33955381-33955510,
           33955674-33955783,33955827-33955950,33956042-33956136,
           33956205-33956300,33956419-33956551,33956668-33956759,
           33956844-33956948,33957201-33957335,33957421-33957526,
           33957621-33957748,33957860-33957958,33958049-33958228,
           33958303-33958446,33958533-33958647,33958739-33958905
          Length = 714

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
 Frame = +3

Query: 6   RQFHSGNFNYKYRDALKRNYNLNQYWVEINIEDLSSFDEILAEKLYKKPTEHLPIXXXXX 185
           R F     ++ YR++L  N +     V + IEDL +FD  L++K+ K P ++LP+     
Sbjct: 44  RGFTGPTGDFPYRESLVHNRD----HVTVAIEDLDAFDAELSDKIRKSPADYLPLFETAA 99

Query: 186 ----XXXXXXXXXPRPEGEEKVE-DIQVILSSDAHSSSLRELKSETVSRLVKIPGIVI 344
                           E EE    D+Q+ LSS  +  S+R + ++ +S+LVKI GI I
Sbjct: 100 SEVLASLRSKVAGETGEMEEPATGDVQIFLSSKENCLSMRSIGADYMSKLVKIAGITI 157


>02_05_0933 +
           32846658-32846729,32847038-32847133,32847243-32847411,
           32847608-32847669,32848364-32849320,32850036-32850119,
           32850307-32850595,32850645-32850694
          Length = 592

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 322 TNLDTVSDLSSLKLDECASEDRMTCISSTFSSPSGLGAV 206
           + LDT +D+ + KLD    EDR+  ++ +   PS   AV
Sbjct: 116 SKLDT-ADVQTQKLDAGLEEDRLCTLNDSIVLPSNCSAV 153


>10_05_0060 +
           8682253-8682305,8682933-8683162,8684448-8684683,
           8687565-8688128
          Length = 360

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 216 RPEGEEKVEDIQVILSSDAHSSSLRELKSETVSRLVKI 329
           R +G ++  +I   + +  H SS  +L +E  S LVK+
Sbjct: 316 RRKGSKRDHEIACSIRAKKHGSSTHQLNTELASFLVKV 353


>09_04_0250 + 16074966-16075418
          Length = 150

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 135 SLPVFHQNWISLLYLFQPNIDLNCSFV 55
           S P   + WIS+ Y F   IDL+C  +
Sbjct: 110 STPAAKKVWISVEYHFNFGIDLSCGMI 136


>03_01_0474 +
           3646724-3646789,3648952-3649067,3649547-3649595,
           3649641-3649697,3649743-3650993
          Length = 512

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 129 PVFHQN-WISLLYLFQPNIDLNCSFVSVHL 43
           P+  QN W+SL+  + P    +C FVS+ L
Sbjct: 44  PLIGQNKWVSLVATYTPRRVTSCGFVSLML 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,945,779
Number of Sequences: 37544
Number of extensions: 110405
Number of successful extensions: 267
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)