Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E22
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...   102   8e-23
AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    29   0.68 
Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical ...    26   6.3  
AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    26   6.3  
AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical...    26   8.3  

>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score =  102 bits (244), Expect = 8e-23
 Identities = 51/113 (45%), Positives = 70/113 (61%)
 Frame = +3

Query: 6   RQFHSGNFNYKYRDALKRNYNLNQYWVEINIEDLSSFDEILAEKLYKKPTEHLPIXXXXX 185
           R F +G F   YRD LKRNY  ++Y +EIN+  L +FDE +  KL K P + LP      
Sbjct: 44  RDFSTGGFGMIYRDQLKRNYFSHEYRLEINLNHLKNFDEDIEMKLRKFPGKVLPALEEAA 103

Query: 186 XXXXXXXXXPRPEGEEKVEDIQVILSSDAHSSSLRELKSETVSRLVKIPGIVI 344
                    PRP+GEEK+ DIQV L+ D + +SLR++KS  VS++VKI GI++
Sbjct: 104 KIVADEITTPRPKGEEKLHDIQVTLTLDEYPTSLRQVKSAQVSQVVKISGIIV 156


>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +3

Query: 6   RQFHSGNFNYKYRDALKRNYNLNQYWVEINIEDLSSFDEILAEK 137
           R  +   F  + R+ L++ YN ++ WVE  + ++ +F+E  A++
Sbjct: 213 RWLYENGFETETREVLEKVYNGDKEWVEYEMAEIIAFNEDQAKE 256


>Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical
           protein B0391.12 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 123 FHQNWISLLYLFQPNIDLNCSFVSVHLCIY 34
           FH NW S + L    I +N SF++V  C Y
Sbjct: 191 FHYNWNSFIALSFMLILINLSFLTVFYCGY 220


>AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical
           protein F32D1.3 protein.
          Length = 774

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 33  YKYRDALKRNYNLNQYWVEINI 98
           Y YR ALKR  NL   W  + I
Sbjct: 456 YHYRQALKRQGNLADAWYNLGI 477


>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 30  NYKYRDALKRNYNLNQYWVEINIEDLSSFDEILA 131
           N  YR   K N    QY+ E N+  L  FDE  A
Sbjct: 32  NQGYRMVEKENEKYWQYYKEQNVFPLEQFDEFRA 65


>AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.1 protein.
          Length = 421

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 222 EGEEKVEDIQVILSSDAHSSSLRELKSETVSRLVKI 329
           E +EK++ +Q +LS+D H   L+   S  + RL ++
Sbjct: 345 EIQEKMDHLQDVLSNDLHEYYLKNKNSMYLRRLKQL 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,580,200
Number of Sequences: 27780
Number of extensions: 117612
Number of successful extensions: 346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)