Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E21
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   0.50 
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   1.2  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   2.0  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    24   3.5  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    23   4.7  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    23   6.2  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    23   6.2  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    23   8.2  

>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 89  DDIFSKMDEDEMRML-SDEPNSSRDF 163
           +D+FS   EDE R L +DE    RDF
Sbjct: 64  EDMFSDTSEDEKRTLPNDEAQKRRDF 89


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 89  DDIFSKMDEDEMRMLSDEPNSSRDFSIGFGYYPGCVGDNREPANRSSG 232
           D+ +S  D  +  M SDE NSS+      G +P    +NRE +   SG
Sbjct: 615 DEGYSSDDSVDNEMYSDEENSSK------GAFPDEENENRELSEDYSG 656


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 109 HFRKYVIVFRPFPASSTFFISNEFLFVYRPLPN 11
           +F + V+  +    + +FFI N F+ VY P  N
Sbjct: 443 YFDQVVVGLKEVKDAFSFFIFNRFVLVYVPAYN 475


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = +3

Query: 126 ECSRMSQIQAEISLLVLAITLDALVITENLPIVVLVLI 239
           + S  ++ Q  + +L++++TL  + + E LP+ V + +
Sbjct: 476 DSSSKNKGQEFLQILIVSVTLLVVAVPEGLPLAVTLAL 513


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 166 REISA*IWLIREHSHFVFIHFRKYVI 89
           RE+S+ IWLI       ++H  K+++
Sbjct: 150 RELSSKIWLIERKLAEFYMHLLKHMV 175


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 230  QNYDWQVLCYHQRIQGNSQNQ*RNLCLNL 144
            ++YD+   C +   QGNSQ    + C N+
Sbjct: 1254 KSYDYITGCNNYDNQGNSQTDASDYCWNV 1282


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 33  KRNSLLMKKVEEAGNGRNTMTYFRKWMK 116
           KR   ++KK ++ GNG + ++   K +K
Sbjct: 17  KRRLEILKKYQQTGNGHSDLSIPEKKLK 44


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 148 IWLIREHSHFVFIHFRKYVI 89
           IW + E+++ + +HF K VI
Sbjct: 592 IWEMDENANIIKVHFTKSVI 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,050,671
Number of Sequences: 5004
Number of extensions: 18898
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)