Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E21
         (253 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   2.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   4.2  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    19   7.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   7.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   9.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    19   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   9.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 79  PFPASSTFFISNEFLFVY 26
           P+P +  FF+   F F++
Sbjct: 271 PYPTALDFFVFLSFAFIF 288


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 203 YHQRIQGNSQNQ 168
           YHQ++QG ++N+
Sbjct: 745 YHQQLQGVAKNK 756


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -3

Query: 164 RNLCLNLAHPRAFS 123
           R  C N  HP  FS
Sbjct: 32  RAFCRNCIHPTVFS 45


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -3

Query: 164 RNLCLNLAHPRAFS 123
           R  C N  HP  FS
Sbjct: 480 RAFCRNCIHPTVFS 493


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 4/13 (30%), Positives = 11/13 (84%)
 Frame = -1

Query: 139 IREHSHFVFIHFR 101
           ++ H+H++ +HF+
Sbjct: 507 LKGHAHWLTLHFK 519


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 92  HRISTVPCFFYFL 54
           H + T+P  F+FL
Sbjct: 326 HALITLPTIFWFL 338


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +2

Query: 140 EPNSSRDFSIGFGYYPGCVGDNREPAN 220
           EP S  +FS   G +  C      P N
Sbjct: 35  EPPSRVEFSNSSGAWLDCTATGSPPLN 61


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +2

Query: 140 EPNSSRDFSIGFGYYPGCVGDNREPAN 220
           EP S  +FS   G +  C      P N
Sbjct: 35  EPPSRVEFSNSSGAWLDCTATGSPPLN 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,176
Number of Sequences: 438
Number of extensions: 1284
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)