Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E19
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    28   0.88 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   2.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.7  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    26   4.7  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   4.7  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    26   4.7  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   8.2  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   8.2  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 262  NLYLKRSYE-YLLSASYFNNYKINRAGFSKMFRKLSDEAWE 381
            + Y   +Y  YLLS  Y  N K+N   F K FR+ S   +E
Sbjct: 1401 HFYYGATYSRYLLSLFYKTNDKVNFLQFLKRFRRSSSTIYE 1441


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 416 EVSTWTSPDVAFYDPEPGKKYVVELHELDSLAKALDTQKELA 541
           ++S  +   + FY  +P ++ V  L E+D+L K LDT   LA
Sbjct: 199 QLSVLSKGHIEFY-LKPTRQTVYRLSEVDNLVKKLDTVIRLA 239


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 244 ELQAYANLYLKRSYEYLLSASYFN 315
           +L  Y N++L  SY+YLLS S  N
Sbjct: 90  DLLEYLNIFLPSSYKYLLSNSGAN 113


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 313 NNYKINRAGFSKMFRKLSDEAWEKAIDLIK 402
           N  +I RAGF  + + ++ + W   +D +K
Sbjct: 174 NQLRITRAGFQFLLQDINAQIWTLLLDYLK 203


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 235 VAGELQAYANLYLKRSYEYLLSASYFNNY 321
           VAG    YA  ++  ++ + +S +YF NY
Sbjct: 138 VAGSFNTYATRFIDPAWGFAVSWNYFLNY 166


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 235 VAGELQAYANLYLKRSYEYLLSASYFNNY 321
           VAG    YA  ++  ++ + +S +YF NY
Sbjct: 138 VAGSFNTYATRFIDPAWGFAVSWNYFFNY 166


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 235 VAGELQAYANLYLKRSYEYLLSASYFNNY 321
           VAG    YA  ++  ++ + +S +YF NY
Sbjct: 138 VAGGFNTYATRFIDPAWGFAVSWNYFINY 166


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 190 GKCNAQYGEYNDYSHVAGELQAYANLYLKRSYEYLLSASYFN 315
           G   A Y  + DYSHV         LY+  S   L+S ++FN
Sbjct: 217 GSTTAGYHGWFDYSHVISRFNEVPALYV-ISGVILVSIAFFN 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,478
Number of Sequences: 5004
Number of extensions: 42452
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)