Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E18
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   1.6  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   2.2  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.2  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   2.8  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   6.6  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   6.6  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    24   8.7  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 100 RGLLGDGNNEPYDDFRLPNGKI-CTSESEF 186
           RG+L D +N   DDF L N +I   SE EF
Sbjct: 38  RGILYDSDNRVVDDFFLNNKRIVLDSEIEF 67


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +2

Query: 131 HTMTSDYLTERSAHLRVNLATHIA--WRAA--VLKSRL---PSTPTTRCTLLCHQPVNR 286
           H M+ D LT+   +   NL T IA  W     + K  L   P+ PTT+C L C + + R
Sbjct: 45  HLMSIDDLTKVKDNAPENLQTIIAVLWDKLEDLQKETLFDDPAAPTTKCALNCMRLLTR 103


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 20  EDGLMAFCTSKLEVCYFEVNGST*ANYVVFSAMVTMSHTMTSDYLTERSAHLRVNLATHI 199
           E   +AF   ++ V +FE NGS         A +  +     D   E    +RV LA H+
Sbjct: 495 ETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYLRKARDFGGDNEFESRLIIRVQLARHV 554


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 115 DGNNEPYDDFRLPNGKICTSESEFGNAYSLARSCPKVQT 231
           DGN   Y  FR PN  + T+      A  L+R C K++T
Sbjct: 36  DGNLLLYRFFRSPNTPLHTNYQHVLWALKLSRYCRKLKT 74


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 76  EWFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEF 186
           +W+   + + LLGD  + P+ DF     +    E+EF
Sbjct: 288 DWYMNSESQNLLGDEVHNPFSDFETVEDR--AHEAEF 322


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 278 VNRCSEESPHFGQSVYY 328
           +N CS +SP F  S+YY
Sbjct: 19  LNECSIDSPSFRASMYY 35


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 359 MHACLNGVISNNRLIGRS 306
           ++ C+N ++S N L+G S
Sbjct: 265 LYECINTIVSGNMLVGHS 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,788
Number of Sequences: 5004
Number of extensions: 34172
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)