Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E18
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0037 - 7613632-7613727,7614452-7615507                           30   0.92 
05_04_0107 - 18039942-18040123,18040228-18040474                       28   2.8  
01_06_0579 + 30379243-30379617                                         27   4.9  
12_01_0725 + 6428572-6428817                                           27   8.6  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    27   8.6  

>11_02_0037 - 7613632-7613727,7614452-7615507
          Length = 383

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 130 PYDDFRLPNGKICTSESEFGNAYSLARSCPKVQTPE-HSHHQMHAALPP 273
           P+   +   G +      +G AY+ AR+ P    P  H HH  H  + P
Sbjct: 223 PHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271


>05_04_0107 - 18039942-18040123,18040228-18040474
          Length = 142

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 284 RCSEESPHFGQSVYY*ISHHSDKRASTRCPEQTPLKTCT 400
           RC       G+ +   + HH    A+ R P  TP+KT T
Sbjct: 13  RCQLHLHRGGEQLVVVVVHHRAAAAADRLPHGTPIKTIT 51


>01_06_0579 + 30379243-30379617
          Length = 124

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 251 RCTLLCHQPVNRCSEESPH 307
           RCT+ CH P+ R S  SPH
Sbjct: 10  RCTISCHSPMRRSS--SPH 26


>12_01_0725 + 6428572-6428817
          Length = 81

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 387 SGVCSGHRVDARLSEWC 337
           SG CSGHR +A ++ WC
Sbjct: 57  SGCCSGHRSEA-VASWC 72


>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
            21497679-21497889,21497977-21498170,21498263-21498364,
            21498525-21499879,21501193-21501494,21501600-21501750,
            21501838-21502102,21502155-21502362,21502467-21502660,
            21502749-21502850,21503481-21503680,21504010-21504846,
            21505806-21506107,21506209-21506359,21506447-21506684,
            21506764-21506971,21507078-21507271,21507322-21507462,
            21513484-21514811,21515923-21516227,21516331-21516481,
            21516570-21516807,21516881-21517088,21517197-21517366,
            21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +2

Query: 56   EVCYFEVNGST*ANYVVFSAMVTMSHTMTSDYLTERSAHLRVNLATHIAWRAAVLKSRLP 235
            ++ YF V  +    Y+ FS      HT T D      +    N  + +A+  A L S + 
Sbjct: 1965 DIFYFSVVDNDEKRYITFSVSEGSPHTRTLDACAAECS----NNCSCVAYAYANLSSSIS 2020

Query: 236  STPTTRC 256
                TRC
Sbjct: 2021 EGDVTRC 2027


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,141
Number of Sequences: 37544
Number of extensions: 260741
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)