Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_E17
(327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 161 2e-41
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 161 2e-41
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 161 2e-41
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 1.7
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 1.7
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 24 5.1
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 24 6.7
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 23 8.8
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 161 bits (391), Expect = 2e-41
Identities = 70/102 (68%), Positives = 86/102 (84%)
Frame = +2
Query: 17 AGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKT 196
+G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T
Sbjct: 11 SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRT 70
Query: 197 RKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 322
E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+
Sbjct: 71 DVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTII 112
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 161 bits (391), Expect = 2e-41
Identities = 70/102 (68%), Positives = 86/102 (84%)
Frame = +2
Query: 17 AGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKT 196
+G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T
Sbjct: 11 SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRT 70
Query: 197 RKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 322
E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+
Sbjct: 71 DVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTII 112
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 161 bits (391), Expect = 2e-41
Identities = 70/102 (68%), Positives = 86/102 (84%)
Frame = +2
Query: 17 AGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKT 196
+G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T
Sbjct: 11 SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRT 70
Query: 197 RKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 322
E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+
Sbjct: 71 DVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTII 112
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 1.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 250 LWQESNSRSWQCNACGCYA 306
LW++ CNACG YA
Sbjct: 429 LWRKDRHGQTVCNACGLYA 447
Score = 24.6 bits (51), Expect = 3.8
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 250 LWQESNSR-SWQCNACGCYA*RY 315
LW+ ++ + ++ CNACG Y +Y
Sbjct: 375 LWRRTSDKLNFLCNACGLYNKQY 397
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 1.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 250 LWQESNSRSWQCNACGCY 303
LW+ S CNACG Y
Sbjct: 22 LWRRGPDNSLLCNACGLY 39
Score = 25.0 bits (52), Expect = 2.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 250 LWQESNSRSWQCNACGCY 303
LW+ S + CNACG Y
Sbjct: 182 LWRRDESGNPICNACGLY 199
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 24.2 bits (50), Expect = 5.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 26 VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 160
V+ + ++KGA LD A +H + + + HDP +G LA
Sbjct: 254 VYTVASPQKKGAVFRLDLDQATQHTLGRELKRFASHDPHQGWHLA 298
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 23.8 bits (49), Expect = 6.7
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = +1
Query: 208 VHCS-RRSLYWSICLLW 255
V C + +YW+ICL W
Sbjct: 20 VQCRIKEIMYWNICLYW 36
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 220 RRSLYWSICLLWQESNSRSWQCNACGC 300
R +LY S C LW+ N+ C+ GC
Sbjct: 60 RVNLYRSSCPLWENDNA---MCSNQGC 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,158
Number of Sequences: 5004
Number of extensions: 29269
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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