Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E17
         (327 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      167   2e-42
06_03_0075 - 16253719-16253841,16255076-16255195,16255752-162558...    27   4.6  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    27   4.6  
02_05_0526 + 29771687-29772115                                         27   4.6  
06_02_0149 - 12289491-12289928                                         26   6.1  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  167 bits (406), Expect = 2e-42
 Identities = 71/105 (67%), Positives = 89/105 (84%)
 Frame = +2

Query: 11  KGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKF 190
           KGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR P+++
Sbjct: 10  KGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRY 69

Query: 191 KTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVC 325
           K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VC
Sbjct: 70  KHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVC 114


>06_03_0075 -
           16253719-16253841,16255076-16255195,16255752-16255895,
           16256323-16256529,16256832-16256876,16257262-16257313,
           16259756-16259831,16260785-16260893,16260992-16261183
          Length = 355

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 1   ARG*RCRFSVCFTYQKKERCT*TSFLRLCR 90
           ARG RCRF VC+ +   E        ++CR
Sbjct: 298 ARGCRCRFLVCYDHDDSEEI--VPLRKMCR 325


>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
            35420909-35420931,35421647-35421843,35421964-35422159,
            35422382-35422481,35423288-35423374,35424053-35424282,
            35424678-35424763,35425148-35425271,35425415-35428573,
            35430014-35430019
          Length = 1566

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 226  SLYWSICLLWQESNSRSWQCNACGC 300
            S Y   CL  QE    SW C+ C C
Sbjct: 1045 STYHQTCLSDQELPEGSWYCHNCTC 1069


>02_05_0526 + 29771687-29772115
          Length = 142

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 2  HEGKGAGSVFVSHTKKRKGAPKLRSLD 82
          HE KG+G+      +KR+G P+ R  D
Sbjct: 17 HEDKGSGAEEAMPARKRRGRPQKRFAD 43


>06_02_0149 - 12289491-12289928
          Length = 145

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +2

Query: 2   HEGKGAGSVFVSHTKKRKGAPKLR----SLDYAERHGYIKGVVKDIIHDPGRG 148
           HE KG+    V   +KR+G P+ R     +D AE     +G   D  +  G G
Sbjct: 17  HEDKGSSGEEVVPARKRRGRPQKRIVDKVVDQAEAKNLTEGDDGDADYQQGEG 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,499
Number of Sequences: 37544
Number of extensions: 205533
Number of successful extensions: 431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)