Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_E16
(506 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 136 3e-32
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 136 3e-32
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 136 3e-32
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 136 3e-32
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 136 3e-32
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 136 3e-32
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 136 3e-32
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 136 3e-32
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 136 3e-32
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 136 3e-32
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 136 3e-32
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 135 1e-31
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 134 2e-31
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 134 2e-31
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 134 2e-31
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 134 2e-31
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 134 2e-31
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 134 2e-31
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 134 2e-31
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 134 2e-31
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 134 2e-31
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 132 5e-31
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 126 4e-29
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 126 4e-29
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 101 1e-21
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 95 1e-19
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 95 1e-19
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 46 6e-05
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 46 6e-05
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 46 6e-05
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 46 6e-05
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 46 6e-05
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 44 4e-04
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 44 4e-04
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 44 4e-04
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 44 4e-04
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 44 4e-04
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 40 0.004
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 40 0.004
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 40 0.004
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 40 0.004
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 40 0.004
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 39 0.012
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 39 0.012
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 39 0.012
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 35 0.19
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 35 0.19
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 35 0.19
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 35 0.19
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 35 0.19
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 35 0.19
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 35 0.19
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 34 0.33
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 34 0.33
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 34 0.33
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 33 0.43
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 33 0.43
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 33 0.43
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 33 0.43
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 31 2.3
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 31 2.3
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 31 2.3
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 31 2.3
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 31 2.3
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 31 2.3
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 31 2.3
BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisia... 31 2.3
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 31 2.3
AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens ... 31 2.3
AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein. 31 2.3
AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin pr... 31 2.3
AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin pr... 31 2.3
AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein prot... 31 2.3
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 31 2.3
AK128134-1|BAC87289.1| 377|Homo sapiens member 6 (SLC12A6). pr... 31 3.1
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 29 7.1
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 136 bits (330), Expect = 3e-32
Identities = 62/82 (75%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 135 bits (326), Expect = 1e-31
Identities = 61/82 (74%), Positives = 73/82 (89%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN++ A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 134 bits (324), Expect = 2e-31
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 134 bits (324), Expect = 2e-31
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 134 bits (324), Expect = 2e-31
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 134 bits (324), Expect = 2e-31
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 134 bits (324), Expect = 2e-31
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 134 bits (324), Expect = 2e-31
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 134 bits (324), Expect = 2e-31
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 134 bits (324), Expect = 2e-31
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 134 bits (324), Expect = 2e-31
Identities = 61/82 (74%), Positives = 71/82 (86%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 132 bits (320), Expect = 5e-31
Identities = 61/82 (74%), Positives = 70/82 (85%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 283 REEKRTLGFVLLRGENIVSLTI 348
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 126 bits (304), Expect = 4e-29
Identities = 58/75 (77%), Positives = 66/75 (88%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+REEKR L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 304 GFVLLRGENIVSLTI 348
G VLLRGEN+VS+T+
Sbjct: 61 GLVLLRGENLVSMTV 75
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 126 bits (304), Expect = 4e-29
Identities = 58/75 (77%), Positives = 66/75 (88%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K A+REEKR L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 304 GFVLLRGENIVSLTI 348
G VLLRGEN+VS+T+
Sbjct: 61 GLVLLRGENLVSMTV 75
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 101 bits (242), Expect = 1e-21
Identities = 46/60 (76%), Positives = 51/60 (85%)
Frame = +1
Query: 169 DSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLGFVLLRGENIVSLTI 348
D R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +REEKR LG VLLRGEN+VS+T+
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 60
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 95.1 bits (226), Expect = 1e-19
Identities = 43/68 (63%), Positives = 53/68 (77%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 283 REEKRTLG 306
REEKR G
Sbjct: 101 REEKRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 95.1 bits (226), Expect = 1e-19
Identities = 43/68 (63%), Positives = 53/68 (77%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 283 REEKRTLG 306
REEKR G
Sbjct: 101 REEKRVSG 108
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/75 (32%), Positives = 44/75 (58%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K ++ +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 304 GFVLLRGENIVSLTI 348
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/75 (32%), Positives = 44/75 (58%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K ++ +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 304 GFVLLRGENIVSLTI 348
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/75 (32%), Positives = 44/75 (58%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K ++ +A E R L
Sbjct: 92 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 147
Query: 304 GFVLLRGENIVSLTI 348
G ++ G +IVS+ +
Sbjct: 148 GLAMVPGHHIVSIEV 162
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/75 (32%), Positives = 44/75 (58%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K ++ +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 304 GFVLLRGENIVSLTI 348
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 46.4 bits (105), Expect = 6e-05
Identities = 24/75 (32%), Positives = 44/75 (58%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K ++ +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 304 GFVLLRGENIVSLTI 348
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 43.6 bits (98), Expect = 4e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
++ +IN V VI D R +GT K FD+ +NLIL + E + ++ E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQVVLG 58
Query: 307 FVLLRGENI 333
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 43.6 bits (98), Expect = 4e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
++ +IN V VI D R +GT K FD+ +NLIL + E + ++ E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQVVLG 58
Query: 307 FVLLRGENI 333
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 43.6 bits (98), Expect = 4e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
++ +IN V VI D R +GT K FD+ +NLIL + E + ++ E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQVVLG 58
Query: 307 FVLLRGENI 333
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 43.6 bits (98), Expect = 4e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
++ +IN V VI D R +GT K FD+ +NLIL + E + ++ E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQVVLG 58
Query: 307 FVLLRGENI 333
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 43.6 bits (98), Expect = 4e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
++ +IN V VI D R +GT K FD+ +NLIL + E + ++ E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE------RVFSSSQGVEQVVLG 58
Query: 307 FVLLRGENI 333
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.004
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNTKTADREEKRTLGF 309
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 310 VLLRGENIV 336
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.004
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNTKTADREEKRTLGF 309
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 310 VLLRGENIV 336
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.004
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNTKTADREEKRTLGF 309
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 310 VLLRGENIV 336
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.004
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNTKTADREEKRTLGF 309
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 310 VLLRGENIV 336
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.004
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNTKTADREEKRTLGF 309
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 310 VLLRGENIV 336
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 38.7 bits (86), Expect = 0.012
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
+ ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 307 FVLLRGENIV 336
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 38.7 bits (86), Expect = 0.012
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
+ ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 307 FVLLRGENIV 336
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 38.7 bits (86), Expect = 0.012
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
+ ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 307 FVLLRGENIV 336
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 34.7 bits (76), Expect = 0.19
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
+Q +V + Q + G FD++MNL+L D EE ++KT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 307 FVLLRGENIVSL 342
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.19
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
+Q +V + Q + G FD++MNL+L D EE ++KT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 307 FVLLRGENIVSL 342
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 34.7 bits (76), Expect = 0.19
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
+Q +V + Q + G FD++MNL+L D EE ++KT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 307 FVLLRGENIVSL 342
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 34.7 bits (76), Expect = 0.19
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
+Q +V + Q + G FD++MNL+L D EE ++KT R++ LG
Sbjct: 14 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 64
Query: 307 FVLLRGENIVSL 342
++L+G+NI L
Sbjct: 65 RIMLKGDNITLL 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.19
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
+Q +V + Q + G FD++MNL+L D EE ++KT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 307 FVLLRGENIVSL 342
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.19
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
+Q +V + Q + G FD++MNL+L D EE ++KT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 307 FVLLRGENIVSL 342
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 34.7 bits (76), Expect = 0.19
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
+Q +V + Q + G FD++MNL+L D EE ++KT R++ LG
Sbjct: 25 LQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 307 FVLLRGENIVSL 342
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.33
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLGFVLL 318
I R+ ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE-------ITPEGRRITKLDQILL 74
Query: 319 RGENIVSL 342
G NI L
Sbjct: 75 NGNNITML 82
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.33
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLGFVLL 318
I R+ ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE-------ITPEGRRITKLDQILL 74
Query: 319 RGENIVSL 342
G NI L
Sbjct: 75 NGNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.33
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLGFVLL 318
I R+ ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE-------ITPEGRRITKLDQILL 74
Query: 319 RGENIVSL 342
G NI L
Sbjct: 75 NGNNITML 82
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.43
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +1
Query: 91 PFSKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIK 258
P S +T N Q IN R +++ +G KAFD+H N++L + +E K
Sbjct: 28 PLSVLTQSVKNNTQVLINCR------NNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSG 81
Query: 259 SKNTKTADREEKRTLGFVLLRGENIV 336
K+ + R + + LRG++++
Sbjct: 82 KGKKKSKPVNKDRYISKMFLRGDSVI 107
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.43
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +1
Query: 91 PFSKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIK 258
P S +T N Q IN R +++ +G KAFD+H N++L + +E K
Sbjct: 28 PLSVLTQSVKNNTQVLINCR------NNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSG 81
Query: 259 SKNTKTADREEKRTLGFVLLRGENIV 336
K+ + R + + LRG++++
Sbjct: 82 KGKKKSKPVNKDRYISKMFLRGDSVI 107
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.43
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +1
Query: 91 PFSKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIK 258
P S +T N Q IN R +++ +G KAFD+H N++L + +E K
Sbjct: 28 PLSVLTQSVKNNTQVLINCR------NNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSG 81
Query: 259 SKNTKTADREEKRTLGFVLLRGENIV 336
K+ + R + + LRG++++
Sbjct: 82 KGKKKSKPVNKDRYISKMFLRGDSVI 107
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.43
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +1
Query: 91 PFSKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIK 258
P S +T N Q IN R +++ +G KAFD+H N++L + +E K
Sbjct: 28 PLSVLTQSVKNNTQVLINCR------NNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSG 81
Query: 259 SKNTKTADREEKRTLGFVLLRGENIV 336
K+ + R + + LRG++++
Sbjct: 82 KGKKKSKPVNKDRYISKMFLRGDSVI 107
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 304 GFVLLRGENIVSL 342
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 304 GFVLLRGENIVSL 342
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 304 GFVLLRGENIVSL 342
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 304 GFVLLRGENIVSL 342
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 304 GFVLLRGENIVSL 342
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 304 GFVLLRGENIVSL 342
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 304 GFVLLRGENIVSL 342
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisiae)
protein.
Length = 360
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 118 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 237
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 304 GFVLLRGENIVSL 342
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ32378 fis, clone SKMUS1000022, weakly similar to
NUCLEAR PORE PROTEIN SEH1 HOMOLOG. ).
Length = 421
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 118 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 237
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein.
Length = 360
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 118 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 237
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin
protein SEH1B protein.
Length = 421
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 118 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 237
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin
protein SEH1A protein.
Length = 360
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 118 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 237
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein
protein.
Length = 360
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 118 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 237
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +1
Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTL 303
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 304 GFVLLRGENIVSL 342
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>AK128134-1|BAC87289.1| 377|Homo sapiens member 6 (SLC12A6).
protein.
Length = 377
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 126 NATTHQLSSQGNITRLAYLHRYIQSFR*THESNTRRL 236
NATTH S +TR YL ++ S TH + RL
Sbjct: 5 NATTHSCSHPHTLTRTMYLITHMLSHTCTHNARAHRL 41
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 29.5 bits (63), Expect = 7.1
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 163 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLGFVLLRGENIVSL 342
L R G + FD MNL++ +C E A ++ +G V++RG +I+ L
Sbjct: 9 LNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIGMVVIRGNSIIML 58
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,222,253
Number of Sequences: 237096
Number of extensions: 1135219
Number of successful extensions: 6674
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 6641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6667
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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