Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E16
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...   123   9e-29
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    41   4e-04
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    41   4e-04
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    40   0.001
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    37   0.007
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    35   0.039
U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical pr...    31   0.36 
U70849-6|ABD63227.1|  284|Caenorhabditis elegans Phosphatidylser...    28   3.4  
U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylser...    28   3.4  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    28   4.5  
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    27   7.8  
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    27   7.8  

>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score =  123 bits (296), Expect = 9e-29
 Identities = 55/82 (67%), Positives = 67/82 (81%)
 Frame = +1

Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTAD 282
           MTI KNNKM  H+NYR+++ILQD RTFIG FKAFDKHMN++L +CEE R+IK K  K  D
Sbjct: 1   MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60

Query: 283 REEKRTLGFVLLRGENIVSLTI 348
            EEKR LG VL+RGE+IVS+T+
Sbjct: 61  GEEKRILGLVLVRGEHIVSMTV 82


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = +1

Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
           + + ++  +RV  Q  R   G  + FD+ +N++L DC E+  ++     +   +E R LG
Sbjct: 16  LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREY--LRDPQNPSVVGDETRQLG 73

Query: 307 FVLLRGENI 333
            ++ RG  I
Sbjct: 74  LIVARGTAI 82


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
 Frame = +1

Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNTKTADREEKRTLGF 309
           ++ RV V +++ R   G  +AFD+H+N++L + EE    R++     +   ++ KR +  
Sbjct: 25  LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKRVVPM 84

Query: 310 VLLRGENIV 336
           + +RG++++
Sbjct: 85  LFVRGDSVI 93


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = +1

Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLG 306
           +  ++N  V V+  D R  +G  K FD+ +NL++ D  E    +++   T        LG
Sbjct: 5   LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTT------PLG 58

Query: 307 FVLLRGENI 333
             ++RGEN+
Sbjct: 59  LYIIRGENV 67


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 21/67 (31%), Positives = 37/67 (55%)
 Frame = +1

Query: 133 QHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLGFV 312
           + ++ ++ V+L+D R  IG  ++ D+  NLIL D  E   ++    +T         GF+
Sbjct: 16  EQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ-------GFM 68

Query: 313 LLRGENI 333
           L+RGEN+
Sbjct: 69  LIRGENV 75


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +1

Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTADREEKRTLGFVLL 318
           I  ++ VI+++ +  +GT   FD ++N++L D  E+         TAD +    L  +LL
Sbjct: 22  IGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYE-------NTADGKRMTKLDTILL 74

Query: 319 RGENIVSL 342
            G +I  L
Sbjct: 75  NGNHITML 82


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +1

Query: 142 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNTKTADREEKRTLGF 309
           N++V +  ++++  +G  KAFD+H N++L + +E      K      K     + R +  
Sbjct: 39  NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISK 98

Query: 310 VLLRGENIV 336
           + LRG++++
Sbjct: 99  MFLRGDSVI 107


>U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical
           protein C49H3.4 protein.
          Length = 223

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 130 QQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 243
           Q+ I  RVR  ++  R F G    FD+H NL++ D  E
Sbjct: 120 QKRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTE 157


>U70849-6|ABD63227.1|  284|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform b protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 191 HSKLSI-NT*I*YSETVKNLEKLSQKILKRLTERKKEL 301
           H+  S+ N  + + +TVK   KLS+  +KRLTE++ EL
Sbjct: 175 HNYCSVENLHLVWPKTVKGRPKLSKHWVKRLTEQRPEL 212


>U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform a protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 191 HSKLSI-NT*I*YSETVKNLEKLSQKILKRLTERKKEL 301
           H+  S+ N  + + +TVK   KLS+  +KRLTE++ EL
Sbjct: 291 HNYCSVENLHLVWPKTVKGRPKLSKHWVKRLTEQRPEL 328


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
            protein C34D4.14 protein.
          Length = 2761

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 490  RHEQVLVNQXERLLAQSPYRLLDHHRGHPLPLEVE 386
            RHE+V V + E  L     RL+  H      LE+E
Sbjct: 2330 RHERVKVTRAEETLLDQAIRLMKFHADRKAVLEIE 2364


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/43 (20%), Positives = 26/43 (60%)
 Frame = +1

Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 252
           +++++++  + + L  +R   G  + FD  MN+++ +  E++K
Sbjct: 8   ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK 50


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/43 (20%), Positives = 26/43 (60%)
 Frame = +1

Query: 124 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 252
           +++++++  + + L  +R   G  + FD  MN+++ +  E++K
Sbjct: 8   ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,226,200
Number of Sequences: 27780
Number of extensions: 189446
Number of successful extensions: 535
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)