Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E14
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   4.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.1  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   5.5  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   9.5  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   9.5  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   9.5  

>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 101 ALSLYMINQSPAGLNKLRTMTNSPNCSHGRHKTNK 205
           +L+ Y +  +P     + T TN P  S  RH   K
Sbjct: 68  SLNSYPLPSAPPNFKSVCTKTNHPESSSSRHSKKK 102


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 79  DKLPDVPSAELVHDKPKPSRSKQTEDDDELAQLQS 183
           D +PD+P    +  +PKPS S +       A L++
Sbjct: 458 DTVPDLPPLGSLSSRPKPSSSSRRRSQSLSAMLKT 492


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 372 NLI*GFNVFKKERFMTLANASTVRFIKKNAIVRIGVIY*SCNVL 503
           N+  G NV  K   + +A+ +T+  I  NA++   V+  +C ++
Sbjct: 454 NVYFGRNVILKGNIVIVASENTILCIPSNAVLENCVVTGNCKIM 497


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 422 GECFNSAIYKKKCNCPNRGHLLI 490
           G C   + YKK   CP+ G++ +
Sbjct: 371 GYCAMESFYKKDATCPHCGNMTV 393


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 73  PTDKLPDVPSA--ELVHDKPKPSRSKQTEDDDELAQLQSWAT 192
           P+   P   SA  E  +  P+P  S+  E+D    +L+  AT
Sbjct: 216 PSSSTPSADSAKPETTNPPPQPQASEPMEEDKTAEELEEAAT 257


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 441 RFIKKNAIVRIGVIY*SCNVLTTFSFSLLVI 533
           R+   ++I +I  I   C V+T FSFSL+ +
Sbjct: 346 RYYTLHSIYKIFRIMVLCGVVTIFSFSLVAL 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,409
Number of Sequences: 5004
Number of extensions: 42002
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)