Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E14
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35...    27   9.7  
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908...    27   9.7  
08_01_0076 - 540886-541527,542173-542754                               27   9.7  
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948...    27   9.7  
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117...    27   9.7  
01_06_0499 + 29823578-29823754,29823882-29824002,29825103-298252...    27   9.7  

>12_01_0045 -
           354825-355504,355602-355776,355847-355927,357266-357498,
           357921-358104
          Length = 450

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 154 DDDELAQLQSWAT*NKQTHTHTLTIEQVHHL 246
           D+ E    Q W   ++    HT+T+E+++HL
Sbjct: 407 DNHETTGPQRWIHHSELEEVHTITVERINHL 437


>09_05_0016 +
           20089545-20089748,20090072-20090263,20090644-20090814,
           20090915-20091096,20091189-20091435,20091776-20091908,
           20092070-20092599,20092940-20093170
          Length = 629

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 119 INQSPAGLNKLRTMTNSPNCSHGRHKTNKHTH 214
           I+  P+   K      SP+CSH  H  NK  H
Sbjct: 269 IDDLPSPSTKSLPRARSPHCSHCGHPGNKKNH 300


>08_01_0076 - 540886-541527,542173-542754
          Length = 407

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 167 SPNCSHGRHKTNKHTHTHLPSNKYTICSRFVCS 265
           S + +  R+  N HT    PSN +  C R  C+
Sbjct: 65  SASANVSRYYYNSHTELFFPSNTFGACERADCA 97


>03_02_1010 -
           13194002-13194339,13194421-13194573,13194661-13194809,
           13194932-13195184,13195282-13195469,13195684-13195841,
           13196093-13196307,13196410-13196614
          Length = 552

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +2

Query: 80  TNCLTCPALSLYMINQSPAGLNKLRTMTNSPNCS---H----GRHKT-NKHTHTHLPSNK 235
           +N   CPA +L ++    A    L+T  N+P      H    GR  T NK       +NK
Sbjct: 319 SNLAKCPASTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANK 378

Query: 236 YTICSRFVC 262
            +I SR  C
Sbjct: 379 CSIASRIDC 387


>01_06_0789 -
           32010131-32010330,32010438-32010866,32011658-32011752,
           32011836-32011933,32012586-32012942,32013615-32013792,
           32013856-32013936,32014441-32014548,32014916-32015178
          Length = 602

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 425 ECFNSAIYKKKCNCPNRGHLLIM*CFNN 508
           ECF S +Y   CNC N        CFNN
Sbjct: 154 ECFASGVYCDGCNCSN--------CFNN 173


>01_06_0499 +
           29823578-29823754,29823882-29824002,29825103-29825227,
           29825338-29825432,29825890-29825994,29826103-29826899,
           29827100-29827154,29827930-29828035,29828126-29828268,
           29828816-29829038
          Length = 648

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 88  PDVPSAELVHDKPKPSRSKQTED-DDEL 168
           PD P  +   D P PSR K ++D +DEL
Sbjct: 245 PDKPKYKCHSDPPSPSRFKPSDDVEDEL 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,690,575
Number of Sequences: 37544
Number of extensions: 247886
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)