Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_E14
(544 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 36 0.092
BC033859-1|AAH33859.1| 224|Homo sapiens chromatin modifying pro... 33 0.49
AY329085-1|AAQ91194.1| 224|Homo sapiens SNF7-2 protein. 33 0.49
AL050349-5|CAC14088.1| 224|Homo sapiens chromatin modifying pro... 33 0.49
AB100261-1|BAC79375.1| 224|Homo sapiens Snf7 homologue associat... 33 0.49
AK126884-1|BAC86735.1| 175|Homo sapiens protein ( Homo sapiens ... 31 2.6
BC020955-1|AAH20955.1| 547|Homo sapiens TBC1D23 protein protein. 30 6.0
BC010221-1|AAH10221.1| 320|Homo sapiens TBC1D23 protein protein. 30 6.0
AY740521-1|AAW66944.1| 320|Homo sapiens HCV nonstructural prote... 30 6.0
AL713684-1|CAD28488.1| 393|Homo sapiens hypothetical protein pr... 30 6.0
AK001908-1|BAA91973.1| 684|Homo sapiens protein ( Homo sapiens ... 30 6.0
AK001750-1|BAA91881.1| 532|Homo sapiens protein ( Homo sapiens ... 30 6.0
AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens ... 29 8.0
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 35.9 bits (79), Expect = 0.092
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +3
Query: 174 IAVMGDIKQTNTHTHTYHRTSTPSVPDSYAHDI------HTHVMSLALY 302
+ + G T+THTHT+ P P ++AH + HTH +L+LY
Sbjct: 20 VEIWGQYLPTHTHTHTHTHAHCPVPPYTHAHAVCTSLHTHTHTHTLSLY 68
>BC033859-1|AAH33859.1| 224|Homo sapiens chromatin modifying
protein 4B protein.
Length = 224
Score = 33.5 bits (73), Expect = 0.49
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 55 MLGINVP-TDKLPDVPSAELVHDKPKPSRSKQTEDDDELAQLQSWA 189
+L I+ P T LP+VPS L KP++ K+ EDDD + +L++WA
Sbjct: 180 LLEISGPETVPLPNVPSIAL---PSKPAKKKEEEDDD-MKELENWA 221
>AY329085-1|AAQ91194.1| 224|Homo sapiens SNF7-2 protein.
Length = 224
Score = 33.5 bits (73), Expect = 0.49
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 55 MLGINVP-TDKLPDVPSAELVHDKPKPSRSKQTEDDDELAQLQSWA 189
+L I+ P T LP+VPS L KP++ K+ EDDD + +L++WA
Sbjct: 180 LLEISGPETVPLPNVPSIAL---PSKPAKKKEEEDDD-MKELENWA 221
>AL050349-5|CAC14088.1| 224|Homo sapiens chromatin modifying
protein 4B protein.
Length = 224
Score = 33.5 bits (73), Expect = 0.49
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 55 MLGINVP-TDKLPDVPSAELVHDKPKPSRSKQTEDDDELAQLQSWA 189
+L I+ P T LP+VPS L KP++ K+ EDDD + +L++WA
Sbjct: 180 LLEISGPETVPLPNVPSIAL---PSKPAKKKEEEDDD-MKELENWA 221
>AB100261-1|BAC79375.1| 224|Homo sapiens Snf7 homologue associated
with Alix 1 protein.
Length = 224
Score = 33.5 bits (73), Expect = 0.49
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 55 MLGINVP-TDKLPDVPSAELVHDKPKPSRSKQTEDDDELAQLQSWA 189
+L I+ P T LP+VPS L KP++ K+ EDDD + +L++WA
Sbjct: 180 LLEISGPETVPLPNVPSIAL---PSKPAKKKEEEDDD-MKELENWA 221
>AK126884-1|BAC86735.1| 175|Homo sapiens protein ( Homo sapiens
cDNA FLJ44936 fis, clone BRAMY3018121. ).
Length = 175
Score = 31.1 bits (67), Expect = 2.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 201 TNTHTHTYHRTSTPSVPDSYAHDIHTHVMS 290
T+THTH + RT + D++ H +HTH ++
Sbjct: 9 THTHTHAHIRTCIHTCTDTHTH-MHTHTLT 37
>BC020955-1|AAH20955.1| 547|Homo sapiens TBC1D23 protein protein.
Length = 547
Score = 29.9 bits (64), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 133 SRSKQTEDDDELAQLQSWAT*NKQTHTHTLTIEQVH---HLFPIRMLMIYIHTLCL 291
S S +D E+ +Q+W NK H ++V H+FP +L+ H CL
Sbjct: 415 SSSMSDDDRKEVVNIQTWI--NKPDVKHHFPCKEVKESGHMFPSHLLVTATHMYCL 468
>BC010221-1|AAH10221.1| 320|Homo sapiens TBC1D23 protein protein.
Length = 320
Score = 29.9 bits (64), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 133 SRSKQTEDDDELAQLQSWAT*NKQTHTHTLTIEQVH---HLFPIRMLMIYIHTLCL 291
S S +D E+ +Q+W NK H ++V H+FP +L+ H CL
Sbjct: 188 SSSMSDDDRKEVVNIQTWI--NKPDVKHHFPCKEVKESGHMFPSHLLVTATHMYCL 241
>AY740521-1|AAW66944.1| 320|Homo sapiens HCV nonstructural protein
4A-transactivated protein 1 protein.
Length = 320
Score = 29.9 bits (64), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 133 SRSKQTEDDDELAQLQSWAT*NKQTHTHTLTIEQVH---HLFPIRMLMIYIHTLCL 291
S S +D E+ +Q+W NK H ++V H+FP +L+ H CL
Sbjct: 188 SSSMSDDDRKEVVNIQTWI--NKPDVKHHFPCKEVKESGHMFPSHLLVTATHMYCL 241
>AL713684-1|CAD28488.1| 393|Homo sapiens hypothetical protein
protein.
Length = 393
Score = 29.9 bits (64), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 133 SRSKQTEDDDELAQLQSWAT*NKQTHTHTLTIEQVH---HLFPIRMLMIYIHTLCL 291
S S +D E+ +Q+W NK H ++V H+FP +L+ H CL
Sbjct: 261 SSSMSDDDRKEVVNIQTWI--NKPDVKHHFPCKEVKESGHMFPSHLLVTATHMYCL 314
>AK001908-1|BAA91973.1| 684|Homo sapiens protein ( Homo sapiens
cDNA FLJ11046 fis, clone PLACE1004473. ).
Length = 684
Score = 29.9 bits (64), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 133 SRSKQTEDDDELAQLQSWAT*NKQTHTHTLTIEQVH---HLFPIRMLMIYIHTLCL 291
S S +D E+ +Q+W NK H ++V H+FP +L+ H CL
Sbjct: 552 SSSMSDDDRKEVVNIQTWI--NKPDVKHHFPCKEVKESGHMFPSHLLVTATHMYCL 605
>AK001750-1|BAA91881.1| 532|Homo sapiens protein ( Homo sapiens
cDNA FLJ10888 fis, clone NT2RP4002052. ).
Length = 532
Score = 29.9 bits (64), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 133 SRSKQTEDDDELAQLQSWAT*NKQTHTHTLTIEQVH---HLFPIRMLMIYIHTLCL 291
S S +D E+ +Q+W NK H ++V H+FP +L+ H CL
Sbjct: 400 SSSMSDDDRKEVVNIQTWI--NKPDVKHHFPCKEVKESGHMFPSHLLVTATHMYCL 453
>AK096940-1|BAC04906.1| 226|Homo sapiens protein ( Homo sapiens
cDNA FLJ39621 fis, clone SMINT2001158. ).
Length = 226
Score = 29.5 bits (63), Expect = 8.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 165 TRPIAVMGDIKQTNTHTHTYHRTSTPSVPDSYAHDIHTHVMS 290
+ P++ + T+ HTH + ST + P + H HTH+++
Sbjct: 38 SHPLSHTYPLTLTHIHTHPHTHISTHTHPLTVTHITHTHLLT 79
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,250,329
Number of Sequences: 237096
Number of extensions: 1406775
Number of successful extensions: 3630
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3582
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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