Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_E14
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr... 30 1.2
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein. 29 2.2
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w... 29 2.2
Z75711-1|CAB00032.1| 196|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 27 6.6
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 27 6.6
Z75711-10|CAK55176.1| 400|Caenorhabditis elegans Hypothetical p... 27 8.7
Z75711-9|CAK55175.1| 331|Caenorhabditis elegans Hypothetical pr... 27 8.7
DQ185512-1|ABA28304.1| 400|Caenorhabditis elegans AXL-1 protein. 27 8.7
>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical
protein C09G5.8 protein.
Length = 1531
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 64 INVPTDKLPDVPSAELVHDKPKPSRSKQTEDDDELAQLQSWAT*NKQTHTHTLTIEQVHH 243
IN+PT ++ S +L++ KP PS + + E Q T H + V+
Sbjct: 735 INIPTPRVNTDLSVKLINVKPSPSLTSKFFFSLEFFDFQLETTPIMDAKQHNMDFTTVYD 794
Query: 244 LFPIRMLMIYIHT 282
+ +L+ Y+ T
Sbjct: 795 VLVSNLLIHYLQT 807
>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical
protein C09G5.8 protein.
Length = 1531
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 64 INVPTDKLPDVPSAELVHDKPKPSRSKQTEDDDELAQLQSWAT*NKQTHTHTLTIEQVHH 243
IN+PT ++ S +L++ KP PS + + E Q T H + V+
Sbjct: 735 INIPTPRVNTDLSVKLINVKPSPSLTSKFFFSLEFFDFQLETTPIMDAKQHNMDFTTVYD 794
Query: 244 LFPIRMLMIYIHT 282
+ +L+ Y+ T
Sbjct: 795 VLVSNLLIHYLQT 807
>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
Length = 1142
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 103 AELVHDKPKPSRSKQTEDDDE 165
AE V D+P S SKQ DDDE
Sbjct: 1012 AETVKDEPAASSSKQDNDDDE 1032
>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 3 protein.
Length = 1142
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 103 AELVHDKPKPSRSKQTEDDDE 165
AE V D+P S SKQ DDDE
Sbjct: 1012 AETVKDEPAASSSKQDNDDDE 1032
>Z75711-1|CAB00032.1| 196|Caenorhabditis elegans Hypothetical
protein K02B12.2 protein.
Length = 196
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +1
Query: 85 LPDVPSAELVHDKPKPSRSKQTED 156
+PD +AE +H KP P++ +++E+
Sbjct: 79 MPDEHNAEDIHSKPSPAKKRKSEE 102
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
protein F39B2.4b protein.
Length = 1589
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 180 VMGDIKQTNTHTHTYHRTSTPSVPDSYAHDIHTHVMSLALYTFCMTV 320
+ G + NT T SVPD Y I+ + +A+Y+F V
Sbjct: 707 MFGTSYKDNTMMRHMAYPKTFSVPDQYPFAINPEIFKMAIYSFLRAV 753
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
protein F39B2.4a protein.
Length = 1587
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 180 VMGDIKQTNTHTHTYHRTSTPSVPDSYAHDIHTHVMSLALYTFCMTV 320
+ G + NT T SVPD Y I+ + +A+Y+F V
Sbjct: 705 MFGTSYKDNTMMRHMAYPKTFSVPDQYPFAINPEIFKMAIYSFLRAV 751
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 180 VMGDIKQTNTHTHTYHRTSTPSVPDSYAHDIHTHVMSLALYTFCMTV 320
+ G + NT T SVPD Y I+ + +A+Y+F V
Sbjct: 705 MFGTSYKDNTMMRHMAYPKTFSVPDQYPFAINPEIFKMAIYSFLRAV 751
>Z75711-10|CAK55176.1| 400|Caenorhabditis elegans Hypothetical
protein K02B12.4b protein.
Length = 400
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 473 YSDNCIFFYKSHC 435
Y+DNC FF+KS C
Sbjct: 346 YTDNCRFFFKSTC 358
>Z75711-9|CAK55175.1| 331|Caenorhabditis elegans Hypothetical
protein K02B12.4a protein.
Length = 331
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 473 YSDNCIFFYKSHC 435
Y+DNC FF+KS C
Sbjct: 277 YTDNCRFFFKSTC 289
>DQ185512-1|ABA28304.1| 400|Caenorhabditis elegans AXL-1 protein.
Length = 400
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 473 YSDNCIFFYKSHC 435
Y+DNC FF+KS C
Sbjct: 346 YTDNCRFFFKSTC 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,500,270
Number of Sequences: 27780
Number of extensions: 241538
Number of successful extensions: 767
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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