Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E14
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    29   0.031
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 0.031
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 55  MLGINVPTDKLPDVPSAELVHDKPKPS 135
           +LG NVP ++L  +P   LV+ +P PS
Sbjct: 20  LLGWNVPAEELIHIPEHWLVYPEPNPS 46


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 281 RYVFSVIHVLHDSVFINISLFF 346
           RY+F+ +H+L+  V + I + F
Sbjct: 45  RYMFTYLHLLYQDVHVMIWIGF 66


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 165 TRPIAVMGDIKQTNTHTHTYHRTSTPSVPDSYAHDIH 275
           TRP   +  I   N +T  Y  T   ++  +   D+H
Sbjct: 27  TRPPGEINSINPINVYTKAYIYTIKSNMAKTLQFDVH 63


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 139 TCWALVYHVQAQRWARQAVCLSAR 68
           +CW  +Y++    WA   + +S R
Sbjct: 108 SCWTNIYYIIILAWALFYLLVSLR 131


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 139 TCWALVYHVQAQRWARQAVCLSAR 68
           +CW  +Y++    WA   + +S R
Sbjct: 161 SCWTNIYYIIILAWALFYLLVSLR 184


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 139 TCWALVYHVQAQRWA 95
           +CW  VY++    WA
Sbjct: 70  SCWMNVYYIVILAWA 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,434
Number of Sequences: 438
Number of extensions: 2830
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)