Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E11
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   1.0  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   1.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    23   5.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    23   7.3  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 20  RCIWRKQTQCEIRAWRTERSC*NFRRSS 103
           RCIWRK  +C   A+ +ER+   FR  S
Sbjct: 163 RCIWRKGKKCH-SAYISERTKPIFRSES 189


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 6   RVIEKDASGENKLSVKFEPGELREAARTFEEARGKI 113
           R  EKD+ G +  SV  +P   +  AR+F   R KI
Sbjct: 210 RKAEKDSRGHSLPSVLTQPINCQADARSFYAERSKI 245


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 12  IEKDASGENKLSVKFEPGELREAARTFEEARGKI 113
           +E  A  E++ S      E  EA R+FE+++GK+
Sbjct: 224 LEDMAGSESRPSYDSIFRESFEAKRSFEDSKGKV 257


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 61  GSNFTLSLFSPDASFSMTL 5
           GSN+TL LF+ D +  M L
Sbjct: 614 GSNYTLLLFTEDNNALMNL 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,685
Number of Sequences: 5004
Number of extensions: 4848
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 25
effective length of database: 2,237,378
effective search space used: 42510182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)