Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E11
         (136 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715...    26   4.9  
04_04_0311 - 24309411-24309525,24309627-24309841                       25   6.4  
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870...    25   8.5  

>04_01_0556 -
           7156851-7157096,7157288-7157530,7158112-7158153,
           7158324-7158425,7159209-7159342,7161071-7161131,
           7161192-7161284,7161557-7161639,7161984-7162239
          Length = 419

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 23  CIWRKQTQCEIRAWRTERSC*NFRRSSW 106
           CI +  T  E+R+WR   +  N  R  W
Sbjct: 234 CIGKSLTMWELRSWRPYGTTINLMRHKW 261


>04_04_0311 - 24309411-24309525,24309627-24309841
          Length = 109

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 17  ERCIWRKQTQCEIRAWRTERSC*NFRRSS 103
           +RC+ R + + E+ +WRT     + RR S
Sbjct: 57  DRCVQRMRARRELCSWRTRNLWGSLRRGS 85


>03_02_0467 +
           8707777-8707892,8708030-8708096,8708190-8708260,
           8708629-8708746,8708820-8708893,8709278-8709333,
           8709448-8709531,8709611-8709698,8709786-8709863,
           8710335-8710391,8710606-8711044
          Length = 415

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 9   VIEKDASGENKLSVKFEPGELREAARTFEE 98
           +I KD  G  K S  F PG+L E  R  E+
Sbjct: 337 IIPKDKEG--KTSFLFTPGDLDECVRKIEQ 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,465
Number of Sequences: 37544
Number of extensions: 30073
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 14,793,348
effective HSP length: 25
effective length of database: 13,854,748
effective search space used: 263240212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)