Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_E08
(325 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 29 0.17
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 28 0.40
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 0.93
SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit L28... 26 1.2
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 26 1.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 1.6
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 2.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 2.1
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 2.8
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 2.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 2.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 3.7
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 3.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 3.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 3.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 3.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 3.7
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 3.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 3.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 3.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 3.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 3.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 3.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 3.7
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 24 4.9
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 24 6.5
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces... 24 6.5
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 24 6.5
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 24 6.5
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 23 8.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 8.6
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 23 8.6
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 23 8.6
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 29.1 bits (62), Expect = 0.17
Identities = 16/72 (22%), Positives = 35/72 (48%)
Frame = +3
Query: 81 SLKMPMDLTDELEQSDSGMESLSASKDDTPERKPEDSFITPSLGSSPSAEIALSGPLKEY 260
SLK + D + ++ + +E+ + + R P DS P + + P++ +A+S ++
Sbjct: 188 SLKKVLSAEDSVRETITDIETALQNMSTSASRTPNDSSPLPYIENRPASSLAVSEKIQNV 247
Query: 261 DDEPDETLSERL 296
+ E + E L
Sbjct: 248 PNWSTEEVVEWL 259
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.9 bits (59), Expect = 0.40
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 120 QSDSGMESLSASKDDTPERKPEDSFITPS--LGSSPS 224
++ S + +SASK+ T ERK S ++PS SSPS
Sbjct: 85 ETSSNSKLISASKEITSERKRAKSSVSPSYLTDSSPS 121
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 0.93
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 81 SLKMPMDLTDELEQSDSGMESLSASKDDTPERKPEDSFITPSLGSSPSAEIALSGPLKEY 260
SLK P +T + + + S+ K +PE +D FI P S+P A + P ++
Sbjct: 1374 SLK-PSTITSTKASAKNKGKKASSVKKQSPE-DDDDDFIIPGSSSTPKASSTNAEPPEDS 1431
Query: 261 D 263
D
Sbjct: 1432 D 1432
>SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit
L28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 118
Score = 26.2 bits (55), Expect = 1.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 194 ETILRLTFRSVIFACAQRLHTTIALFK--FVSQIHRHFKRYTAILTNSP 54
E +L+ F ++ AC + HT+ L+K I+R F T T++P
Sbjct: 65 ENLLKNQFSAMKIACEELKHTSETLYKAAMSDSINRRFPVETRTPTDTP 113
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 1.6
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 126 DSGMESLSASKDDTPERKPEDSFITPSLGSSPSAEIALSGPLKEYDDEPDETLSE 290
D ESL K+DT E K + + + +G++ +++ + PL E +++ DE+ E
Sbjct: 566 DMKKESLEL-KNDTTEIKEKKNSKSRVVGNTENSKDEFNNPLFETEEQIDESWME 619
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 1.6
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 84 LKMPMDL-TDELEQSDSGMESLSASKDDTPERKPEDSFI 197
+K P+D+ TD+ S+ +E +AS D PE + ++ I
Sbjct: 1163 IKEPLDVVTDDNTNSNFSLEETNASVTDMPESEKHENGI 1201
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 2.1
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +3
Query: 99 DLTDELEQSDSGMESLSASKDDTPERKPEDSFITPSLGSSPSAEIALSG 245
D SDS +S S S D E EDS T S S S+ + G
Sbjct: 269 DSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDG 317
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 99 DLTDELEQSDSGMESLSASKDDTPERKPEDSFITPSLGSSPSAEIA 236
DLT ++ ++ +G E +S+S +P + SLGS S +A
Sbjct: 1519 DLTQQILENSAGSEDISSSWLGRTVSRPRLDTVLSSLGSKFSKFVA 1564
Score = 24.2 bits (50), Expect = 4.9
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +3
Query: 108 DELEQSDSGMESLSASKDDTPERKPEDSFITPSLGSSPSAEIALSGPLKEYDDEPDETLS 287
D+++ +D S S+ + +P DSF+ ++ +S S + ++ EP E +
Sbjct: 30 DDIDVTDENT-IFSTSRKEQSTIEPMDSFVENNIANSSSQQSVSEIDIQLPSSEPKEGVK 88
Query: 288 E 290
E
Sbjct: 89 E 89
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 2.8
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -3
Query: 209 ERWGYETILRLTFRSVIFACAQRLHTTIALFKFVSQIHRH--FKRYTAI 69
+RW ++T+LR+ + F L T + L ++H + K Y A+
Sbjct: 443 KRWHFDTLLRVFKSAGNFVSESTLSTFLRLIASAPELHEYAVVKLYAAL 491
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 114 LEQSDSGMESLSASKDDTPERKPEDSFITPSLGSSP 221
L Q + + ++ A+ D E+K E +TPS+ P
Sbjct: 447 LLQISTPISNIKANGKDDEEKKEESDLVTPSVKFKP 482
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.0 bits (52), Expect = 2.8
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 138 ESLSASKDDTPERKPEDSFITPSLGSSPSAEIALSGPLKEYDDEPDETLS 287
E S SK PE K EDS + S +E +++ + P+ ++
Sbjct: 455 EKSSTSKPPVPENKAEDSVVLKSSVPEDKSENSIASKPSATEGIPENAIA 504
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 24.6 bits (51), Expect = 3.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 87 KMPMDLTDELEQSDSGM-ESLSASKDDTPERKPEDSF 194
K+P DE E + ESLS S+ +T ED+F
Sbjct: 87 KLPPVSQDEFESIIEDLPESLSGSESETNSESEEDNF 123
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 3.7
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 93 PMDLTDELEQSDSGMESLSASKDDTPERKPEDSFITPSLGSSPSAEIALSGPLKEYDDE 269
P+ T+E + S +++ S S+D P + E + SL SSPS+E + + DD+
Sbjct: 230 PVSATNEANKL-SDIQTSSPSQD-IPAKHLEPLHLNRSLSSSPSSEDSDLSLSSDSDDD 286
Score = 23.8 bits (49), Expect = 6.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 93 PMDLTDELEQSDSGMES---LSASKDDTPERKPEDSFITPSLGSS 218
P+ L L S S +S LS+ DD +++P S T S+ S
Sbjct: 259 PLHLNRSLSSSPSSEDSDLSLSSDSDDDEKKQPSKSEKTSSMSVS 303
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 QAYVQECHLCLRSKTPYH 130
Q YVQ CH C +K+ H
Sbjct: 951 QEYVQNCHTCQINKSRNH 968
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 24.2 bits (50), Expect = 4.9
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 78 VSLKMPMDLTDELEQSDSGMESL---SASKDDTPERKPEDSFITPSLGSSPS 224
VSLK + +E Q G + + S + TP R+P + S+ +SPS
Sbjct: 124 VSLKHIKAMPEEKRQEIEGNKEILKKSTTIRSTPVREPTKAISVASMSTSPS 175
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 6.5
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 147 SASKDDTPERKPEDSFITPSLGSSPSAEIALSGP 248
+AS PE DSF PS S + + + P
Sbjct: 24 TASSTQVPENNQSDSFAPPSNNSQQNQQSSTIAP 57
>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 160
Score = 23.8 bits (49), Expect = 6.5
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -2
Query: 243 R*EQFPRWVMNRAMGL*NYPQAYVQECHLCLRSKTPYH--YRFVQVRQ 106
R QFP+ ++ G+ Y QA + L L PY Y V V Q
Sbjct: 3 RKSQFPQGLVRAPFGIRGYAQAVQKNEKLVLSMALPYQTIYEKVPVTQ 50
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 23.8 bits (49), Expect = 6.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 243 GPLKEYDDEPDETL 284
GPL EYD E + TL
Sbjct: 29 GPLPEYDSEEESTL 42
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 23.8 bits (49), Expect = 6.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 105 TDELEQSDSGMESLSASKDDTPERKPEDSFITPSLGSSPSAEIALSGPL 251
T + S + S +S TP KP P++ S+ SA ++ PL
Sbjct: 273 TSSVATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAYSASVSSQPPL 321
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 23.4 bits (48), Expect = 8.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 84 LKMPMDLTDELEQSDSGMESLSASKDDTPERKPEDSFI 197
L P + L D+ S S K TPE P+D ++
Sbjct: 595 LMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYL 632
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.4 bits (48), Expect = 8.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 135 MESLSASKDDTPERKPEDSFITPSLGSSPSAEIALS 242
ME S DD + E S TP++ ++ I+LS
Sbjct: 1419 MEKKLESPDDVQSLQAESSVSTPAVTAASEKSISLS 1454
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 23.4 bits (48), Expect = 8.6
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -3
Query: 182 RLTFRSVIFACAQRLHTTIALFKFVSQIHRHFKRY 78
RLT + F C + T L K + H RY
Sbjct: 154 RLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRY 188
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 23.4 bits (48), Expect = 8.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 168 PERKPEDSFITPSLGSSPSAEIALS 242
PE P +S PS+ + P +E++ S
Sbjct: 446 PEEPPSNSDKQPSMSNGPKSEVSPS 470
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,372
Number of Sequences: 5004
Number of extensions: 22067
Number of successful extensions: 103
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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