Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_E06
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 33 0.018
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 29 0.50
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 28 0.66
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 28 0.66
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 27 1.5
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 1.5
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.0
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 26 2.7
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 25 4.7
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 6.2
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 25 8.2
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 25 8.2
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 33.5 bits (73), Expect = 0.018
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +1
Query: 13 FSPDDAMVFTGESLKRGEEVGKLTFFDAKTFEIVTRL----EVTDSHVIKAV-WHAKLNQ 177
FSP ++ G + + L DA T + L + T + + AV W+ K+NQ
Sbjct: 351 FSPTQKLILAGSTAVNSMKA-PLFVLDAMTLDTKATLFFDSKSTVTASVSAVSWNEKINQ 409
Query: 178 IFIGCGNGVVKCYYDKRRSLRGAKLCVVKANRKK 279
+ +G +G + S+RG K ++ + K
Sbjct: 410 VSLGSADGNAYVLFSPNESIRGVKDAAMRPPKSK 443
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 28.7 bits (61), Expect = 0.50
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 104 NVFASKKVNFPTSSPRFNDSPVNTIASSG 18
N + S+K++FP + +S +T+ASSG
Sbjct: 43 NPYPSEKIDFPKKNTAHKNSTTSTVASSG 71
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 28.3 bits (60), Expect = 0.66
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 304 QQIITPHALP-LFRQEKLRTSKKKMEKDRLDPVKSHRPDLPITS 432
QQII ++ ++ L+ SK+K E + L P K H LP+ S
Sbjct: 209 QQIIRKNSSQGPYQSSSLKQSKRKSEGNLLFPEKPHSAQLPLVS 252
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 28.3 bits (60), Expect = 0.66
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 10 AFSPDDAMVFTGESLKRGEEVGKLTFFDAKTFEIVT-RLEVTDSHVIKAVWHAK 168
A+SPD G+ L G+ GK+ +DA + E++T R ++ W+AK
Sbjct: 486 AYSPD------GKYLACGDASGKVVLYDANSREVITSRWAFHTGRILGMSWNAK 533
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 106 EIVTRLEVTDSHVIKAVWHAKLNQIFIGCGNGVVKCYYDKRRSLRGAKL 252
EI + +TD+ ++KA + NQ++ CG G RR L ++
Sbjct: 424 EIPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEI 472
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.1 bits (57), Expect = 1.5
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 13 FSPDDAMVFTGESLKRGEEVGKLTFFDAKTFEIVTRLEVTDSHVIKAVWH 162
FSPD VF+G+S G F+D KT +++ +L V +H
Sbjct: 494 FSPDGRFVFSGDS------SGNACFWDWKTCKLMAKLPAHSGPVQSMAFH 537
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 2.0
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +1
Query: 193 GNGVVKCYYDKRRSLRGAKLCVVKANRKKQSIEVVSTQQIITPHALPLFRQEKLRTSKKK 372
G + D++++L + + K IE++ +++ + +LR KKK
Sbjct: 192 GQSTLNSLKDRQQALEKEVNIFKEREKIKSYIEMLGLAKMLVIYREKTNVFNQLRADKKK 251
Query: 373 MEKDRLDPVKSHRPDL 420
++KD D V+ +P L
Sbjct: 252 LKKDLKDLVEEFQPIL 267
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 2.7
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +1
Query: 43 GESLKRGEEVGKLTFFDAKTFEIVTRLEVTDSHVIKAVWHAKLNQIFIGCGNGVVKCY 216
G L G G+ T ++ TF + D V A W + G G G+VK +
Sbjct: 93 GRRLLTGSSTGEFTLWNGLTFNFELINQSHDYAVRCAEWSTDGRWLISGDGGGMVKYF 150
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 136 SHVIKAVWHAKLNQIFIGCGNGVVKCY-YDKRRSLRGAK 249
+HV +W K Q+ +G +GV+ + + +S+R K
Sbjct: 167 NHVTSVLWTGKGTQLAVGTDSGVIYIWDIESTKSVRSLK 205
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 6.2
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = +1
Query: 205 VKCYYDKRRSLRGAKLCVVKANRKKQSIEVVSTQQIITPHALPLFRQEKLRTSKKKMEKD 384
V Y ++ A L + + S+ ++T + + + E +T K EKD
Sbjct: 107 VASYKVPQKEKEPANLVPLGESGSSLSVSTINTSNLPDHDYKTIIQNEVEQTLSPKDEKD 166
Query: 385 RLDPVKSH 408
LDP++ +
Sbjct: 167 LLDPMRDY 174
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 8.2
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -1
Query: 237 ETPSLVVVTLDDPVAATDEDLVQF--RVPHCFDHMRVRHFQSRHDFERFRIEESQFSDFL 64
E PS ++ +++T D+++ R+P RV+ +S + + R + S+ +DFL
Sbjct: 249 EDPSESGEMIEQVISSTMNDVLRILDRLP------RVQANESVYAYNRLK---SELTDFL 299
Query: 63 TPFQRFPREHHRVVRTEGAS 4
TPF R +RVV E S
Sbjct: 300 TPFAR----ENRVVTKEDIS 315
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +1
Query: 43 GESLKRGEEVGKLTFFDAKTFEIVTRLEVTDSHVIKAVWH 162
G+ L + GK+ +D T E ++ TD + W+
Sbjct: 241 GDLLLSADVEGKIKIWDIDTMECISTQSETDGAIWAVAWY 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,178
Number of Sequences: 5004
Number of extensions: 32041
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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