Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_E06
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081... 124 4e-29
11_01_0755 - 6343084-6345172,6345526-6346367 30 0.88
05_05_0058 + 22004851-22005193,22005283-22005674 28 3.5
05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330 28 3.5
03_02_0642 + 10086400-10086505,10086675-10087014,10087072-100871... 28 3.5
03_02_1004 + 13133261-13133971,13134052-13134915 28 4.7
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418... 28 4.7
02_05_1228 + 35086576-35087139,35089125-35089268,35090436-350906... 27 6.2
01_06_1528 + 38011391-38011635,38012366-38012566,38012659-380128... 27 8.2
>10_08_0299 -
16607152-16607322,16607465-16607785,16607870-16608121,
16608298-16608435,16608544-16608651,16608814-16609014,
16609109-16609233,16609252-16609321,16609919-16610455
Length = 640
Score = 124 bits (299), Expect = 4e-29
Identities = 70/168 (41%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Frame = +1
Query: 10 AFSPDDAMVFTGESLKR-GEEVGKLTFFDAKTFEIVTRLEVTDSH-VIKAVWHAKLNQIF 183
AFSPD+ ++FTG S+++ GE G L FFD + E+V+R+ ++ + VI+ +WH ++NQ+F
Sbjct: 420 AFSPDEQLIFTGTSIEKDGENGGLLCFFDRRKLELVSRVGISPHYSVIRCLWHPRINQVF 479
Query: 184 IGCGN---GVVKCYYDKRRSLRGAKLCVVKANRKKQSIEVVSTQQII-TPHALPLFRQEK 351
G+ G YD S RGA +CV +A RKK S++ Q +I PHALPLFR +
Sbjct: 480 ATVGDKKEGGTHILYDPSISQRGALVCVGRAPRKK-SVDDFEVQPVIHNPHALPLFRDQP 538
Query: 352 LRTSKKKMEKDRLDPVKSHRPDLPITS-GQGGRVAAS-GSTLSSFVIR 489
R K++ EK DP+KSH+P+ P+ G GGRV + GS L+ ++++
Sbjct: 539 SR--KRQREKILKDPLKSHKPEAPVNGPGFGGRVGTTKGSLLTQYLLK 584
>11_01_0755 - 6343084-6345172,6345526-6346367
Length = 976
Score = 30.3 bits (65), Expect = 0.88
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Frame = +1
Query: 124 EVTDSHVIKAVWHAKLNQIFIGCGNGVVKCYYDKRRSLRGAKLCVVKANRKKQSIEVVST 303
++ D HV K ++ L+ ++G G+ + Y R+ +G C+ + +K I +
Sbjct: 589 DLKDDHV-KYIYKL-LHLKYLGLGSTIT---YIPRKINKGLH-CLQTLDLRKTRINTLPV 642
Query: 304 QQIITPHALPLFRQEKLRTSKK--KMEKDRLDPVKSHRPDLPITSG 435
+ II PH LF + K+R ++ +E ++++ + S + L +G
Sbjct: 643 EIIIMPHLAHLFGKIKIREARGLWVLETNKIEKILSDKSKLQTLAG 688
>05_05_0058 + 22004851-22005193,22005283-22005674
Length = 244
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 312 HHSARATAVQAGEAAHQQEEDGEGSARPSQITP 410
H + R A+ AG+ E GEG+A P ++ P
Sbjct: 107 HEAGRQVAIVAGDEDAAVEALGEGAADPGEVEP 139
>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
Length = 564
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +1
Query: 382 DRLDPVKSHRPDLPITS----GQGGRVAASGSTLSS 477
D +DP+ +HR D ++S G G RVAAS S S+
Sbjct: 41 DDVDPLPNHRDDASLSSSAAGGGGMRVAASSSKASA 76
>03_02_0642 +
10086400-10086505,10086675-10087014,10087072-10087156,
10088679-10088764,10089154-10089331,10089425-10089624,
10089964-10090297
Length = 442
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 473 LSVLPEAATRPPCPEVIGRSGRCDLT 396
LSV P AT PP P++ + RC +T
Sbjct: 72 LSVEPATATPPPAPKMAFNATRCSVT 97
>03_02_1004 + 13133261-13133971,13134052-13134915
Length = 524
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 394 PVKSHRPDLPITSGQGGRVA 453
P ++H DLP +G GGR+A
Sbjct: 486 PEEAHEDDLPAAAGDGGRLA 505
>02_02_0663 -
12740733-12741104,12741260-12741326,12741709-12741809,
12741852-12742273,12743678-12743685,12745164-12745396
Length = 400
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/52 (19%), Positives = 24/52 (46%)
Frame = +1
Query: 37 FTGESLKRGEEVGKLTFFDAKTFEIVTRLEVTDSHVIKAVWHAKLNQIFIGC 192
F+G+ L G G + F+D K+ ++++++ +H + + C
Sbjct: 339 FSGKELTSGSSDGCIYFYDYKSSRLLSKIQAFKEPCTDVAYHPVIPNVIASC 390
>02_05_1228 +
35086576-35087139,35089125-35089268,35090436-35090600,
35090722-35090796,35091468-35091671
Length = 383
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 346 EKLRTSKKKMEKDRLDPVKSHRPD 417
E LR S K+++ D +D V HRPD
Sbjct: 102 EGLRGSLKRLDMDYVDVVYCHRPD 125
>01_06_1528 +
38011391-38011635,38012366-38012566,38012659-38012836,
38012946-38013208,38013380-38013649,38013753-38014950
Length = 784
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 464 LPEAATRPPCPEVIGRSGRCDLTGSSRSFSIF 369
LP PCP + SG C G S +F F
Sbjct: 410 LPWLTACTPCPPELAASGHCPTIGRSGNFKNF 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,201,657
Number of Sequences: 37544
Number of extensions: 228145
Number of successful extensions: 841
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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