Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E04
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    77   2e-15
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    26   2.2  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   5.0  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   6.7  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.7  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   6.7  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   8.8  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    24   8.8  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
 Frame = +3

Query: 87  MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 263
           MAPP YA + K  ND+  + + +G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58

Query: 264 KYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKL 425
            +  K  GLT ++ W T N L + + + ++ A GL + +  TF+P T +KT  L
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAIL 112


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 183 KSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLAT 332
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 222  SNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNT 323
            SNQ   K+  +L+ +   K +   +  K   DNT
Sbjct: 1160 SNQSKDKIIAALAKRNVYKSFAGLYDSKGKNDNT 1193


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 321 TLATDITIQDKIAAGLKVTLEGTFAPQTGSKTG 419
           T+A D++   ++ A   VTLEGT   +TG  TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 207 TSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLAT 332
           T+G  +   +G V G LS    +    + F EK++ +  LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 102 YADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLS 260
           YA  G   N   S  YH G    D+  ++E+ +  T+G  + ++SG   GS S
Sbjct: 317 YAMFGSCNNPQCSL-YH-GAVSADVPEQTEAPISKTAGSINPEDSGSEIGSNS 367


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 392 KGAFKCNLKASCNLILNGNISRQSVVCIPFLC 297
           +G +   L  +C L L GNIS      +  +C
Sbjct: 166 EGFWLQKLSQTCRLALTGNISEAKAFIVEIMC 197


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +3

Query: 171  DLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDITIQD 350
            D +  SESGV+  S  T  Q +  V     +     +Y  T +   +  +    +I I D
Sbjct: 4560 DKQFSSESGVQMFSHFTFEQSNTNVLALADASMKCFNYANTASHHRSNSDIRQLEIIISD 4619

Query: 351  KI 356
             I
Sbjct: 4620 GI 4621


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 255 LSSKYAVKDYGLTFTEKWNTDNTLATDITIQDKI 356
           +++  AVKDY +     +NT N++   + I D I
Sbjct: 7   INAAAAVKDYSIKPRLSYNTVNSITGPLVILDNI 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,243
Number of Sequences: 5004
Number of extensions: 33746
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)