Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_E04
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 52 3e-07
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 31 0.31
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 31 0.41
10_08_1050 - 22559518-22559613,22559736-22559846,22559966-225600... 29 1.6
09_04_0427 - 17458974-17459129,17459227-17459335,17459753-174598... 27 5.0
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964 27 5.0
06_03_0033 + 15719864-15720049,15720139-15720601,15720638-157212... 27 6.6
01_05_0444 + 22298490-22298598,22299847-22300108,22302420-223025... 27 6.6
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 27 8.7
01_06_0328 + 28507942-28508610,28509669-28510826 27 8.7
01_04_0020 + 15142402-15143421 27 8.7
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 51.6 bits (118), Expect = 3e-07
Identities = 37/109 (33%), Positives = 52/109 (47%)
Frame = +3
Query: 87 MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 266
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 267 YAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGSK 413
+K+ LT K N+++ L T +T+ + GLK L Q K
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGK 104
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 31.5 bits (68), Expect = 0.31
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +3
Query: 96 PYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAV 275
P Y G + D+ SK +HL + + + G++F SG+ S + V L+ + A+
Sbjct: 261 PQYVH-GTQLPDLESKFFHLDLMHPSVY---KVGLQFLSGVISGGNACCVAMLLAFREAI 316
Query: 276 KDYGLTFTEKWNTDNT 323
KDY T+ N D T
Sbjct: 317 KDYSTPSTKTLNRDLT 332
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 31.1 bits (67), Expect = 0.41
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -1
Query: 217 IPLVNSTPDSLLVFKSSLNTPR**PLLKTSLAFFPRSA*YGGAMPEVY 74
+P + PDSLLV +SL R PLL++ L+ P SA G P ++
Sbjct: 115 LPGFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLF 162
>10_08_1050 -
22559518-22559613,22559736-22559846,22559966-22560034,
22560172-22560327,22560416-22560458,22560566-22560661,
22561136-22561249,22561390-22561574
Length = 289
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 102 YADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKD 281
YAD ANDV+ +G FK +T S + I + V +L+ Y KD
Sbjct: 133 YADTSGAANDVYEFVKKIGKFKETKRTDGVSTSDLIMRILKDYNQ-YVMRNLARGYTRKD 191
Query: 282 YGLTFTEK 305
G+++ ++
Sbjct: 192 LGVSYVKE 199
>09_04_0427 -
17458974-17459129,17459227-17459335,17459753-17459862,
17459981-17460226,17460591-17460680,17461325-17461602,
17461814-17461942,17462007-17462418
Length = 509
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 225 NQESGKVFGSLSSKYAVKDYGLTFTEKW 308
N + + +++Y+VKD LT T KW
Sbjct: 422 NGDMDSICSLTATRYSVKDLNLTITHKW 449
>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
Length = 586
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 231 ESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEG 386
+ G G+ S++ ++KD L F + TD L+ + + DKI + V L+G
Sbjct: 304 QGGNNNGNFSNQPSLKD--LVFAQAETTD-ALSKKLAVNDKILENINVKLDG 352
>06_03_0033 +
15719864-15720049,15720139-15720601,15720638-15721254,
15721300-15721869,15723625-15724140
Length = 783
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 228 QESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEG 386
Q G G+ S++ ++KD L F + NT + L+ + DKI + V L+G
Sbjct: 215 QGGGNNNGNFSNQPSLKD--LVFAQA-NTTDALSKKLAANDKILENIDVKLDG 264
>01_05_0444 +
22298490-22298598,22299847-22300108,22302420-22302516,
22302633-22302647,22302775-22302831,22303481-22303557,
22303688-22303967
Length = 298
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 398 WCKGAFKCNLKASCNLILNGNISRQSVVCIPFL 300
W A + KA +L N S Q++VC+PF+
Sbjct: 137 WLCNAQSADSKAFPRKLLAKNASIQTIVCVPFM 169
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 186 SESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTE 302
S +G T G + + K FG++SSK V YG+ E
Sbjct: 458 SIAGARGTIGYIAPEVYSKQFGAISSKSDVYSYGMMILE 496
>01_06_0328 + 28507942-28508610,28509669-28510826
Length = 608
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 186 SESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTE 302
S +G T G + + K FG++SSK V YG+ E
Sbjct: 479 SIAGARGTIGYIAPEVYSKQFGAISSKSDVYSYGMMILE 517
>01_04_0020 + 15142402-15143421
Length = 339
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +1
Query: 265 NMPLRTMASHSQRNGIQTTLWRLILPFRIRLQ-----LALRLHLKA 387
N+P+ +H+ RNG W +L F + + LAL + L+A
Sbjct: 79 NVPMPMHGTHADRNGGSNPAWNTVLHFPVPARFDTRGLALHVQLRA 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,187,027
Number of Sequences: 37544
Number of extensions: 207429
Number of successful extensions: 433
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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