Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_E04
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...   122   1e-28
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    34   0.051
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    34   0.051
AC024813-5|AAK27883.1|  255|Caenorhabditis elegans Hypothetical ...    29   1.9  
AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AL023835-13|CAA19497.4|  304|Caenorhabditis elegans Hypothetical...    27   4.4  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score =  122 bits (294), Expect = 1e-28
 Identities = 56/116 (48%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
 Frame = +3

Query: 87  MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESG--VEFTSGITSNQESGKVFGSLS 260
           MAPP +ADLGK A D+F+KGY+ G  K+D  T++     VEF S  + N  SGK+ G+L 
Sbjct: 1   MAPPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGGNLD 60

Query: 261 SKYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLK 428
            KY +  YG+T TEKWNT+N L T I + ++   GLKVTL+  +AP  G ++GK+K
Sbjct: 61  VKYKIPQYGITLTEKWNTENQLGTVIEVNEQFGRGLKVTLDSLYAPHAGKRSGKVK 116


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
            T08A11.1 protein.
          Length = 1872

 Score = 33.9 bits (74), Expect = 0.051
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 180  TKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATD 335
            T+S  G         + +S    G+ S KY V  +G T  EKWN D  + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
            protein T08A11.1 protein.
          Length = 1872

 Score = 33.9 bits (74), Expect = 0.051
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 180  TKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATD 335
            T+S  G         + +S    G+ S KY V  +G T  EKWN D  + TD
Sbjct: 1044 TRSRRGANMEDDRKHSSKSNSA-GNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094


>AC024813-5|AAK27883.1|  255|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1b protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 198 VEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDI 338
           +E   G+ S  E+ K+F   +S+  ++ + LTF  +W   + L T I
Sbjct: 184 LEGGGGVASQSETRKIF-LFTSRIFIEAFSLTFVAEWGDRSQLTTII 229


>AC024813-4|AAK27882.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54F10AL.1a protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 198 VEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDI 338
           +E   G+ S  E+ K+F   +S+  ++ + LTF  +W   + L T I
Sbjct: 184 LEGGGGVASQSETRKIF-LFTSRIFIEAFSLTFVAEWGDRSQLTTII 229


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 243 VFGSLSSKYAVKDYGLTFTEKWNTDNTLATDI 338
           VFG LSS     DYG+T   K+ TD      I
Sbjct: 252 VFGELSSSKKTIDYGITKQWKYRTDGRFELSI 283


>AL023835-13|CAA19497.4|  304|Caenorhabditis elegans Hypothetical
           protein Y37A1B.15 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 264 KYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFA 395
           KY +K    TF+ KW   N L   +T+   + + L    +GTF+
Sbjct: 62  KYMIKTLSKTFSRKWEISNNLI--MTLLILLLSALFFISQGTFS 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,575,864
Number of Sequences: 27780
Number of extensions: 182351
Number of successful extensions: 397
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)