Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_E01
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 262 9e-71
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 262 9e-71
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 262 9e-71
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 82 2e-16
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 46 1e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 46 1e-05
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.002
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 31 0.33
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 31 0.33
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 31 0.33
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 30 1.00
Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical p... 29 1.3
Z81476-1|CAB03921.2| 431|Caenorhabditis elegans Hypothetical pr... 29 1.3
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 29 1.3
Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical p... 28 3.1
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 28 3.1
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 3.1
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 3.1
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 3.1
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 28 4.0
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 28 4.0
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 28 4.0
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 7.0
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 27 7.0
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 27 7.0
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 27 7.0
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 27 7.0
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 27 7.0
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 27 7.0
Z49068-4|CAC42319.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical pr... 27 9.3
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 27 9.3
AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical... 27 9.3
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 262 bits (642), Expect = 9e-71
Identities = 121/155 (78%), Positives = 135/155 (87%)
Frame = +3
Query: 3 TRVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIV 182
T VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI+
Sbjct: 253 TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVII 312
Query: 183 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 362
+NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK ED PK +KSGDA IV L+P
Sbjct: 313 MNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIP 372
Query: 363 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 467
+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 373 TKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 262 bits (642), Expect = 9e-71
Identities = 121/155 (78%), Positives = 135/155 (87%)
Frame = +3
Query: 3 TRVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIV 182
T VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI+
Sbjct: 287 TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVII 346
Query: 183 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 362
+NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK ED PK +KSGDA IV L+P
Sbjct: 347 MNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIP 406
Query: 363 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 467
+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 407 TKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 262 bits (642), Expect = 9e-71
Identities = 121/155 (78%), Positives = 135/155 (87%)
Frame = +3
Query: 3 TRVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIV 182
T VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI+
Sbjct: 287 TEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVII 346
Query: 183 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 362
+NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK ED PK +KSGDA IV L+P
Sbjct: 347 MNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIP 406
Query: 363 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 467
+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 407 TKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 82.2 bits (194), Expect = 2e-16
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Frame = +3
Query: 42 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 221
+ V GDN+ F +K + EL+ G++ + G F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FDAEVLVLEHRSIIASGYSC 450
Query: 222 VLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 401
VL +A + +D++TG+ + K +K + I+ L +P +E F+E+P
Sbjct: 451 VLHIQSAVEEVTVKGVIATIDKKTGE--KKRAKFVKQDEKCIMRLESPEPFVLEPFKEYP 508
Query: 402 PLGRFAVRDMRQTVAVG-VIKAV 467
LGRF +RD +T+A+G V+K V
Sbjct: 509 YLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = +3
Query: 162 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 341
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 487 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 546
Query: 342 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 467
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = +3
Query: 162 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 341
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 505 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 564
Query: 342 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 467
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = +3
Query: 9 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 188
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 189 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 296
HP I Y +L + + ++V RTG
Sbjct: 479 HPTTIKPNYQAMLHIGSVRQTATLVSMGKEV-LRTG 513
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 31.5 bits (68), Expect = 0.33
Identities = 35/153 (22%), Positives = 64/153 (41%)
Frame = +3
Query: 9 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 188
+ +E + + +A PGD +G ++ + K++RRG V + + + AQ+ VL
Sbjct: 300 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLK 358
Query: 189 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 368
TP+ + + H+ + V R GK + G++A V L +
Sbjct: 359 E--SEGGAKTPIANYFSEHVFSLTWDSGASV-RIIGKD------FVMPGESAEVELSLNS 409
Query: 369 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 467
+ +E P RF +R +T+ GV V
Sbjct: 410 QMFIE------PQQRFTIRKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 31.5 bits (68), Expect = 0.33
Identities = 35/153 (22%), Positives = 64/153 (41%)
Frame = +3
Query: 9 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 188
+ +E + + +A PGD +G ++ + K++RRG V + + + AQ+ VL
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLK 359
Query: 189 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 368
TP+ + + H+ + V R GK + G++A V L +
Sbjct: 360 E--SEGGAKTPIANYFSEHVFSLTWDSGASV-RIIGKD------FVMPGESAEVELSLNS 410
Query: 369 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 467
+ +E P RF +R +T+ GV V
Sbjct: 411 QMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 31.5 bits (68), Expect = 0.33
Identities = 35/153 (22%), Positives = 64/153 (41%)
Frame = +3
Query: 9 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 188
+ +E + + +A PGD +G ++ + K++RRG V + + + AQ+ VL
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLK 359
Query: 189 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 368
TP+ + + H+ + V R GK + G++A V L +
Sbjct: 360 E--SEGGAKTPIANYFSEHVFSLTWDSGASV-RIIGKD------FVMPGESAEVELSLNS 410
Query: 369 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 467
+ +E P RF +R +T+ GV V
Sbjct: 411 QMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 227 GLPHSPHSLQICRNQRESRPSYW*INR 307
GL HSPHS N R S P ++ INR
Sbjct: 47 GLVHSPHSSFTTENLRSSDPMFFDINR 73
>Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical
protein C25F9.13 protein.
Length = 224
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 286 VVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 405
++L++ T L L + P + W PPS C P+ ++ P
Sbjct: 149 LILISSLITCFLNLKLSIVPSTKWRPPSSCTMYPANSTFP 188
>Z81476-1|CAB03921.2| 431|Caenorhabditis elegans Hypothetical
protein C25F9.1 protein.
Length = 431
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 286 VVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 405
++L++ T L L + P + W PPS C P+ ++ P
Sbjct: 149 LILISSLITCFFNLKLEIVPSTKWRPPSSCTMYPANSTFP 188
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 259 LPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWS 384
LPK+ T V + TT+ P +PP +T PP +S
Sbjct: 264 LPKTTVAPTTTTVPRTTTTVPPTTTTVPPTTTTVPPITTTYS 305
>Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical
protein K07A1.9b protein.
Length = 457
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 435 ASCHARRNDRGVGIPGRTPHTGAW 364
+SC +NDRG P R+ +GAW
Sbjct: 15 SSCGYCKNDRGERTPARSAKSGAW 38
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 9 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 188
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLC 508
Query: 189 H 191
H
Sbjct: 509 H 509
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 225 LDCHTAHIACKFAEIKEKVDRRTGKSTE 308
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 225 LDCHTAHIACKFAEIKEKVDRRTGKSTE 308
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 225 LDCHTAHIACKFAEIKEKVDRRTGKSTE 308
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 127 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS 32
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 127 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS 32
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 127 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS 32
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 127 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS 32
+P+T P S TD L LKPT +P T S S
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETS 135
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 132 KNNPPRGAAD-FTAQVIVLNHP 194
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 132 KNNPPRGAAD-FTAQVIVLNHP 194
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 175 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTAS 44
T A +AAP GGLF + T P T T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 142 HPGELQTSQRKSLC*ITQVKYQTDTHLYWI 231
H G + ++ SLC +T Y+ +LYWI
Sbjct: 311 HNGSSRFTELLSLCTVTNKYYEDVQYLYWI 340
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +3
Query: 15 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 134
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +3
Query: 15 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 134
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 94 TDTFLTLKPTLSPGTASCRASWCISTD 14
T FLTL+ T T C+ SWC D
Sbjct: 42 TSLFLTLQSTGPEMTNLCKKSWCDKVD 68
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 261 AEIKEKVDRRTGKSTEDNPKS 323
AEI + +D+ GKSTE++P++
Sbjct: 27 AEILQSLDKSLGKSTEESPEA 47
>Z49068-4|CAC42319.1| 705|Caenorhabditis elegans Hypothetical
protein K01C8.3b protein.
Length = 705
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 331 LVMPPLSTWFPPSPCVWSPSRNSHPSVVS 417
L+MP ++ W P + P+ NS PS+++
Sbjct: 139 LIMPGITHWQHPRFHAYFPAGNSFPSIIA 167
>Z49068-3|CAA88862.1| 650|Caenorhabditis elegans Hypothetical
protein K01C8.3a protein.
Length = 650
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 331 LVMPPLSTWFPPSPCVWSPSRNSHPSVVS 417
L+MP ++ W P + P+ NS PS+++
Sbjct: 139 LIMPGITHWQHPRFHAYFPAGNSFPSIIA 167
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
C46A5.4 protein.
Length = 1432
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 42 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRG 152
+EA+P N + ++V RR +VAGD ++N G
Sbjct: 983 KEALPQGNQERDCRSVLQNRQRRCFVAGDERSNEQPG 1019
>AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical
protein Y110A2AL.1 protein.
Length = 142
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 105 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQI 203
RR Y D P+GA DF AQ++ PG I
Sbjct: 64 RRHYF--DLHGMTPQGAVDFVAQIVEGRRPGYI 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,026,073
Number of Sequences: 27780
Number of extensions: 315014
Number of successful extensions: 1025
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -