Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D24
         (91 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   1.3  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    24   2.3  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    24   3.1  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    23   5.4  

>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 20  SSFISCIFVLKYFFLFFIY 76
           ++  +C+F    FFLFF+Y
Sbjct: 299 AAIFACLFPYTEFFLFFVY 317


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 5   EGELVSSFISCIFVLKYFFLFFI 73
           E E VSSF+  + V+ +FF+  I
Sbjct: 207 ECEFVSSFLKVVIVIIFFFVAII 229


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 41 FVLKYFFLFFIYTFSLK 91
          F++ YF + F Y FS+K
Sbjct: 10 FIVYYFIISFSYAFSIK 26


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   ARGRTSLELYFMYLRP*IFFSILH 72
           A GRT + LYF ++ P   + ILH
Sbjct: 231 ATGRTLVNLYFSHVHP--SYPILH 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,460
Number of Sequences: 5004
Number of extensions: 2832
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 11
effective length of database: 2,307,434
effective search space used: 41533812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)