Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D24
         (91 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68116-2|CAA92173.1|  243|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z29121-6|CAH19096.1|  405|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z29121-5|CAD54174.2|  403|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z22180-12|CAH19086.1|  405|Caenorhabditis elegans Hypothetical p...    25   7.2  
Z22180-11|CAD54147.2|  403|Caenorhabditis elegans Hypothetical p...    25   7.2  

>Z68116-2|CAA92173.1|  243|Caenorhabditis elegans Hypothetical
           protein F42F12.3 protein.
          Length = 243

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 29  ISCIFVLKYFFLFFIYTFSLK 91
           ++CIF++ YF+   IY F ++
Sbjct: 74  LNCIFLVHYFYRALIYPFRIR 94


>U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical
           protein B0361.4 protein.
          Length = 330

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 11  ELVSSFISCIFVLKYFFLFFIYTF 82
           +L SS  SC F + Y+F +F   F
Sbjct: 306 DLKSSIYSCYFSIIYYFYYFFSIF 329


>Z29121-6|CAH19096.1|  405|Caenorhabditis elegans Hypothetical
           protein ZK757.4b protein.
          Length = 405

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 26  FISCIFVLKYFFLFFIYTF 82
           F+SC+F L   FLFF + +
Sbjct: 246 FLSCMFSLSLSFLFFYHLY 264


>Z29121-5|CAD54174.2|  403|Caenorhabditis elegans Hypothetical
           protein ZK757.4a protein.
          Length = 403

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 26  FISCIFVLKYFFLFFIYTF 82
           F+SC+F L   FLFF + +
Sbjct: 244 FLSCMFSLSLSFLFFYHLY 262


>Z22180-12|CAH19086.1|  405|Caenorhabditis elegans Hypothetical
           protein ZK757.4b protein.
          Length = 405

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 26  FISCIFVLKYFFLFFIYTF 82
           F+SC+F L   FLFF + +
Sbjct: 246 FLSCMFSLSLSFLFFYHLY 264


>Z22180-11|CAD54147.2|  403|Caenorhabditis elegans Hypothetical
           protein ZK757.4a protein.
          Length = 403

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 26  FISCIFVLKYFFLFFIYTF 82
           F+SC+F L   FLFF + +
Sbjct: 244 FLSCMFSLSLSFLFFYHLY 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,432
Number of Sequences: 27780
Number of extensions: 15005
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 12,740,198
effective HSP length: 11
effective length of database: 12,434,618
effective search space used: 223823124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)