Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D23
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 82 3e-17
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 81 8e-17
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.062
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 28 0.77
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 28 0.77
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 28 0.77
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.0
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 27 1.0
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 26 3.1
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 26 3.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 4.1
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 4.1
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 4.1
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 5.4
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 5.4
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 5.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 5.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 25 7.2
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 24 9.5
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 24 9.5
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 24 9.5
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 82.2 bits (194), Expect = 3e-17
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +2
Query: 29 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 208
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 209 KI 214
+I
Sbjct: 61 RI 62
Score = 73.7 bits (173), Expect = 1e-14
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +3
Query: 210 KFTXRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 383
+ RS++KPF+K +NYNHLMPTRY+++ K + +P++R + + FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 384 RYKSGKNKWFFQKLRF 431
+Y++GK+ WFF LRF
Sbjct: 121 KYQTGKSAWFFTPLRF 136
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 81.0 bits (191), Expect = 8e-17
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +3
Query: 210 KFTXRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 383
+ RS++KPF+K VNYNHLMPTRY+++ K +A K+P +R R + FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 384 RYKSGKNKWFFQKLRF 431
+Y+SGK+ WFF LRF
Sbjct: 121 KYQSGKSAWFFTPLRF 136
Score = 78.6 bits (185), Expect = 4e-16
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +2
Query: 29 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 208
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 209 KI 214
+I
Sbjct: 61 RI 62
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.062
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 20 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 121
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 27.9 bits (59), Expect = 0.77
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 22 IQDG*DYETWKSGAGPQRPVR 84
++ G + E WKSGAG Q P++
Sbjct: 432 VRGGMEVEVWKSGAGAQLPMK 452
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 0.77
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = -1
Query: 413 EPFVLSALVSLFETDPCVETQL---LALSWVF 327
EPF ++ ++S ++ PCV T L + L+W F
Sbjct: 120 EPFQIARIISFEKSRPCVSTNLYDSVRLNWYF 151
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 0.77
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 195 GWEKIKFTXRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA 317
GW+ I +T KI F+ NY+ MP +S ++ +KF A
Sbjct: 97 GWQFILWTDE-KIMSFMNE-NYSWFMPVFHSYPYNIQKFDA 135
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 35 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 118
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 1.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 82 VPAAEDQHHFSRFHNLTHLGWI 17
+P +HFSRF + T GWI
Sbjct: 7 IPFTRALYHFSRFRSFTTSGWI 28
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -3
Query: 156 TKACPYGLSDV-PSS*FFTTMALRPAY--RPLRTSTTFPGFIIL 34
T AC YGL +V S+ FF +++R Y R ++ FP I++
Sbjct: 73 TMACNYGLKNVFSSASFFREVSVRMVYYVRYIQWLINFPLIIVM 116
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 3.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +3
Query: 231 IKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRFNTR 368
+ PF K Y H + T S S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 211 FIFSHPFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFT 89
FI F ++ D ESM F+R A +++ Y G T
Sbjct: 1092 FICQQVFQSVILAIHDPYFESMQSDFIRLACIILSYSQGIT 1132
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 294 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 428
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 33 VRL*NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDMLSS 158
+RL L ++CWS ++ S R +LT ++++L++
Sbjct: 94 LRLQRLRQYCWSGGKRMESCLDTSLSTYERDYLTRYSELLAA 135
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 135 LSDVPSS*FFTTMALRPAYRPLRTSTTFPG 46
L ++P + FF T+ AY P S T G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 269 NANPLFCRLQL*KIQCKGPKRPS*AQEAAFQH 364
N +P+ QL K++ P++PS A +++F H
Sbjct: 271 NISPVSPFAQLVKLEPTSPQKPSFALDSSFSH 302
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 288 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 404
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 288 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 386
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 24.6 bits (51), Expect = 7.2
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +3
Query: 180 ARFIKGWEKIKFTXRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKD 332
AR++ G+ + T K+ + HL+ R+ V FS+ + S +++
Sbjct: 259 ARYLVGFAPLYRTDDEKVIKTLNVTRLPHLVAIRHGVAFSYSERSVSAMRN 309
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 24.2 bits (50), Expect = 9.5
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 159 PASTDTRARFIKGWEKIKFTXRSKIKPFVKGVNYNHLMPTRYSVDFSFEKF 311
PAS +T ++ +EKI+ + + K F+K N + S++ + + F
Sbjct: 105 PASMETINLIVEKFEKIRASATEETKDFIKLNEVNEFPSSDTSLESNQDGF 155
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 72 AAGTQAVKPLS*RITTRAHLTNHTDMLSSPASTDTRARFIKGWEKIKFTXRSKI 233
A G + ++PLS I T HL +L + + I G E + FT ++++
Sbjct: 397 AEGQKIIRPLSNPIKTEGHLR----VLRGSLAPEGSVAKITGKEGLNFTGKARV 446
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 9.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 17 YPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 118
Y ++ G + GK+V+++SG A K+ + + D
Sbjct: 40 YSTESGMLFHAGKLVIIMSGLPARGKSNIAVSID 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,860
Number of Sequences: 5004
Number of extensions: 40401
Number of successful extensions: 126
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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