Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D23
         (452 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070827-1|AAL48449.1|  135|Drosophila melanogaster AT27980p pro...   118   4e-27
AE014297-3837|AAF56495.1|  135|Drosophila melanogaster CG4759-PA...   118   4e-27
AE013599-1694|AAF58382.1|  506|Drosophila melanogaster CG17050-P...    32   0.41 
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran...    29   3.9  
AF315785-1|AAK01366.1|  437|Drosophila melanogaster pol polyprot...    29   3.9  
AY070994-1|AAL48616.1|  262|Drosophila melanogaster RE08669p pro...    28   5.1  
AE014298-686|AAF45990.1|  345|Drosophila melanogaster CG15470-PA...    28   5.1  
AE014297-4764|AAF57167.1|  262|Drosophila melanogaster CG11522-P...    28   5.1  
AE014297-4763|AAF57166.1|  243|Drosophila melanogaster CG11522-P...    28   5.1  
BT023319-1|AAY55735.1|  413|Drosophila melanogaster IP10558p pro...    28   6.8  
AE013599-3314|AAF46789.1|  413|Drosophila melanogaster CG13501-P...    28   6.8  

>AY070827-1|AAL48449.1|  135|Drosophila melanogaster AT27980p
           protein.
          Length = 135

 Score =  118 bits (284), Expect = 4e-27
 Identities = 54/77 (70%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
 Frame = +3

Query: 204 KIKFTXRSKIKPFVKGVNYNHLMPTRYSV-DFSFEKFSAKDLKDPAKRKKLRFNTRVRFE 380
           K K   +SK+KPF+K +NYNHLMPTRY+  D SFEK S KDLKDP KRK  RF TRV+FE
Sbjct: 59  KNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKLSPKDLKDPVKRKTHRFQTRVKFE 118

Query: 381 ERYKSGKNKWFFQKLRF 431
             YK GKNKWFFQKLRF
Sbjct: 119 SVYKEGKNKWFFQKLRF 135



 Score =  108 bits (259), Expect = 4e-24
 Identities = 49/73 (67%), Positives = 60/73 (82%)
 Frame = +2

Query: 29  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 208
           M KIMK GK+V+VLSGRYAGRKAI+VK +D+GT +KP+GHA VAGIDRYPRKV K+MGKN
Sbjct: 1   MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYPRKVTKKMGKN 60

Query: 209 KIHXAVENQAFRK 247
           K+    + + F K
Sbjct: 61  KLKKKSKVKPFLK 73


>AE014297-3837|AAF56495.1|  135|Drosophila melanogaster CG4759-PA
           protein.
          Length = 135

 Score =  118 bits (284), Expect = 4e-27
 Identities = 54/77 (70%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
 Frame = +3

Query: 204 KIKFTXRSKIKPFVKGVNYNHLMPTRYSV-DFSFEKFSAKDLKDPAKRKKLRFNTRVRFE 380
           K K   +SK+KPF+K +NYNHLMPTRY+  D SFEK S KDLKDP KRK  RF TRV+FE
Sbjct: 59  KNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKLSPKDLKDPVKRKTHRFQTRVKFE 118

Query: 381 ERYKSGKNKWFFQKLRF 431
             YK GKNKWFFQKLRF
Sbjct: 119 SVYKEGKNKWFFQKLRF 135



 Score =  108 bits (259), Expect = 4e-24
 Identities = 49/73 (67%), Positives = 60/73 (82%)
 Frame = +2

Query: 29  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 208
           M KIMK GK+V+VLSGRYAGRKAI+VK +D+GT +KP+GHA VAGIDRYPRKV K+MGKN
Sbjct: 1   MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYPRKVTKKMGKN 60

Query: 209 KIHXAVENQAFRK 247
           K+    + + F K
Sbjct: 61  KLKKKSKVKPFLK 73


>AE013599-1694|AAF58382.1|  506|Drosophila melanogaster CG17050-PA
           protein.
          Length = 506

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 273 PTRYSVDFSFEKFSAKDLKDPAKRKKLRF 359
           P  Y  +F FE+F  KDL+  AK K L+F
Sbjct: 60  PKPYVKEFEFERFHLKDLRSDAKFKHLQF 88


>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
           transcriptase-like polymeraseprotein.
          Length = 1059

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 373 RTLVLKRSFLRLAGSFRSFALNFSKL 296
           RTL   RSFL L+G +R F  N++KL
Sbjct: 425 RTLKELRSFLGLSGYYRRFIPNYAKL 450


>AF315785-1|AAK01366.1|  437|Drosophila melanogaster pol polyprotein
           protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 373 RTLVLKRSFLRLAGSFRSFALNFSKL 296
           RTL   RSFL L+G +R F  N++KL
Sbjct: 269 RTLKELRSFLGLSGYYRRFIPNYAKL 294


>AY070994-1|AAL48616.1|  262|Drosophila melanogaster RE08669p
           protein.
          Length = 262

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/33 (27%), Positives = 23/33 (69%)
 Frame = +2

Query: 11  TEYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVK 109
           +E+     + + PG V+++L+GR+ G++ +++K
Sbjct: 104 SEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLK 136


>AE014298-686|AAF45990.1|  345|Drosophila melanogaster CG15470-PA
           protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +2

Query: 200 GKNKIHXAVENQAFRKRCKLQSSNANPLFCRLQL*KIQCKGPKRPS*AQEAAFQHKGPFR 379
           G N  + +  N +    C    SNA  L  +L       K P  P+  Q A+ Q +   +
Sbjct: 179 GSNNSNISGSNMSSNSNCGTLKSNAKLLPLQLMATPPSRKEPLTPAHPQAASIQAQAQVQ 238

Query: 380 REIQERKEQ 406
            ++Q++ +Q
Sbjct: 239 HQLQQQHQQ 247


>AE014297-4764|AAF57167.1|  262|Drosophila melanogaster CG11522-PB,
           isoform B protein.
          Length = 262

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/33 (27%), Positives = 23/33 (69%)
 Frame = +2

Query: 11  TEYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVK 109
           +E+     + + PG V+++L+GR+ G++ +++K
Sbjct: 104 SEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLK 136


>AE014297-4763|AAF57166.1|  243|Drosophila melanogaster CG11522-PA,
           isoform A protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/33 (27%), Positives = 23/33 (69%)
 Frame = +2

Query: 11  TEYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVK 109
           +E+     + + PG V+++L+GR+ G++ +++K
Sbjct: 85  SEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLK 117


>BT023319-1|AAY55735.1|  413|Drosophila melanogaster IP10558p
           protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = -1

Query: 443 NYTLEPKLL----EEPFVLSALVSLFETDPC 363
           N T +PK+L    E+P   SAL  +F  DPC
Sbjct: 186 NLTCKPKVLGIFLEDPENFSALAEIFRQDPC 216


>AE013599-3314|AAF46789.1|  413|Drosophila melanogaster CG13501-PA
           protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = -1

Query: 443 NYTLEPKLL----EEPFVLSALVSLFETDPC 363
           N T +PK+L    E+P   SAL  +F  DPC
Sbjct: 186 NLTCKPKVLGIFLEDPENFSALAEIFRQDPC 216


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,999,853
Number of Sequences: 53049
Number of extensions: 440012
Number of successful extensions: 1250
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)