Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D23
(452 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 101 2e-22
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 101 2e-22
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 30 0.69
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 30 0.69
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 30 0.69
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 30 0.69
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.2
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 4.8
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 4.8
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 4.8
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z81056-9|CAB02908.2| 292|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 27 8.4
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 101 bits (243), Expect = 2e-22
Identities = 49/73 (67%), Positives = 55/73 (75%)
Frame = +2
Query: 29 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 208
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 209 KIHXAVENQAFRK 247
KI + + F K
Sbjct: 61 KIEKRNKLKPFLK 73
Score = 95.9 bits (228), Expect = 1e-20
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Frame = +3
Query: 192 KGWEKIKFTXRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNT 365
K K K R+K+KPF+K V+Y HL+PTRYSVD +F+K + + LK P+K++K
Sbjct: 55 KDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEV 114
Query: 366 RVRFEERYKSGKNKWFFQKLRF 431
+ +FEERYK+GKNKWFF KLRF
Sbjct: 115 KSKFEERYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 101 bits (243), Expect = 2e-22
Identities = 49/73 (67%), Positives = 55/73 (75%)
Frame = +2
Query: 29 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 208
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 209 KIHXAVENQAFRK 247
KI + + F K
Sbjct: 61 KIEKRNKLKPFLK 73
Score = 95.9 bits (228), Expect = 1e-20
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Frame = +3
Query: 192 KGWEKIKFTXRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNT 365
K K K R+K+KPF+K V+Y HL+PTRYSVD +F+K + + LK P+K++K
Sbjct: 55 KDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEV 114
Query: 366 RVRFEERYKSGKNKWFFQKLRF 431
+ +FEERYK+GKNKWFF KLRF
Sbjct: 115 KSKFEERYKTGKNKWFFTKLRF 136
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 30.3 bits (65), Expect = 0.69
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = -2
Query: 175 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 17
V+V E +WF+ + G +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 30.3 bits (65), Expect = 0.69
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = -2
Query: 175 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 17
V+V E +WF+ + G +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 30.3 bits (65), Expect = 0.69
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = -2
Query: 175 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 17
V+V E +WF+ + G +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 30.3 bits (65), Expect = 0.69
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = -2
Query: 175 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 17
V+V E +WF+ + G +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 35 KIMKPGKVVLVLSGRYAGRKAIVVK 109
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 355 RSFLRLAGSFRSFALNFSKLKST 287
+SFL L G +R F LNF+++ S+
Sbjct: 1259 QSFLGLVGYYRKFILNFAQIASS 1281
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 355 RSFLRLAGSFRSFALNFSKLKST 287
+SFL L G +R F LNF+++ S+
Sbjct: 1162 QSFLGLVGYYRKFILNFAQIASS 1184
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 355 RSFLRLAGSFRSFALNFSKLKST 287
+SFL L G +R F LNF+++ S+
Sbjct: 1173 QSFLGLVGYYRKFILNFAQIASS 1195
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 328 KTQLSARSCVSTQGSVSKRDTRAERTNGSSRSLG 429
KT+ S S+ S + +DTR + G SRSLG
Sbjct: 376 KTKAKTASGASSVKSFASQDTRNKSNAGDSRSLG 409
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical protein
K08H10.7 protein.
Length = 1020
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 156 SPASTDTRARFIKGWEK-IKFTXRSKIKPFVKGVNYNHLMPTRYSVDF 296
+PA TD +K WE+ +K + + I G + L+ ++Y DF
Sbjct: 868 TPAETDVAVAAVKQWEEDMKESKETGIVNPSSGTTVDKLIVSKYKFDF 915
>Z81056-9|CAB02908.2| 292|Caenorhabditis elegans Hypothetical
protein F09F3.11 protein.
Length = 292
Score = 26.6 bits (56), Expect = 8.4
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Frame = -1
Query: 443 NYTLEPKLLEEPFVLSALVSLFETDPCVETQLLALSWVF*VLCTEFFKAEVYRITGWH*M 264
+Y P++L +A + T P +E + + T + + ITG +
Sbjct: 56 DYENIPRILNVFVGQTAGFGAYVTGPILELFMSLNRFAALYFATRHLRISDFPITGIAII 115
Query: 263 --IVVYTFYERLDFRPLCEFYFFPSF------YEPCA 177
V Y L FRP C F F+P+ Y PCA
Sbjct: 116 GAFAVAILYTCLGFRPNCGFVFYPATFTWDKEYTPCA 152
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 156 SPASTDTRARFIKGWEK-IKFTXRSKIKPFVKGVNYNHLMPTRYSVDF 296
+PA TD +K WE+ +K + + I G + L+ ++Y DF
Sbjct: 868 TPAETDVAVAAVKQWEEDMKESKETGIVNPSSGTTVDKLIVSKYKFDF 915
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,841,237
Number of Sequences: 27780
Number of extensions: 228335
Number of successful extensions: 697
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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