Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D21
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 54 6e-09
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 46 3e-06
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 1.0
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 27 1.4
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 4.1
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 25 4.1
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.5
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 24 7.2
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c... 24 7.2
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 24 9.5
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 54.4 bits (125), Expect = 6e-09
Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = +2
Query: 230 ARVKCNVHRVNN-IDHTIYLRSSISSDKDVNTFSMTIREWYPYHFPELVSIVPEN 391
A+VK NV+R +N I I + + DKD+NTF+M ++EWY +HFPEL IV +N
Sbjct: 157 AKVKFNVNRNDNMIIQAIAILDQL--DKDINTFAMRMKEWYSWHFPELSKIVGDN 209
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 45.6 bits (103), Expect = 3e-06
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = +2
Query: 305 DKDVNTFSMTIREWYPYHFPELVSIVPEN 391
DK++NT++M +REWY +HFPE+ I+ +N
Sbjct: 174 DKELNTYAMRVREWYGWHFPEMGKIIQDN 202
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 27.1 bits (57), Expect = 1.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 272 HTIYLRSSISS--DKDVNTFSMTIREWYPYHFPELVSIV 382
H I +SI+ D ++ ++EWY FPEL S+V
Sbjct: 118 HLIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLV 156
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 26.6 bits (56), Expect = 1.4
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -3
Query: 140 MLSI-TVGKTPLELAPDMTNNVCV*CFTDGSSY---IWDPALQPRAEFLQ 3
+LS+ T+G P E P + N C DG S +WD A Q E L+
Sbjct: 24 LLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLR 73
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 89 TNNVCV*CFTDGSSYIWDPALQPR 18
+NN+ V C TDG +IW+P + R
Sbjct: 305 SNNI-VTCSTDGLVHIWEPDMFSR 327
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 4.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 221 ILEARVKCNVHRVNNIDHTIYLRSSISSDKDVNTFSMTIREWYPYHFPELVSIVP 385
ILE R+K HR++ D ++ S ++ ++ + F T R + F LVS +P
Sbjct: 255 ILEQRLKR--HRIDVSDEDLHPSSQLNDNEASSLFPDTPRLNHSLSFVSLVSSLP 307
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 366 SGK*YGYHSLIVMENVLTSLSELIEER 286
+GK + YH L+ + N +T+ S L ++R
Sbjct: 247 NGKSFLYHMLVSLHNQVTNTSHLEKQR 273
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 330 MENVLTSLSELIEERKYIV*SMLFTRCTLHL 238
+ENV+T + EL + K + ++ RC+ HL
Sbjct: 48 LENVITQVKELDKGPKDYLYWVILGRCSAHL 78
>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 216
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 170 ADIKSMQCRTTGPLDIRILEARVKCNVHRVNNIDHT 277
+D++ ++ L+ EAR++ N+ R+N+ D T
Sbjct: 126 SDVERLKTSFRDQLNNSTSEARLQLNIDRLNHYDET 161
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 23.8 bits (49), Expect = 9.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 173 DIKSMQCRTTGPLDIRILEARVKCNVHRVNNIDHTIYLRSSISSDK 310
D KS + +T + I+ + +KC +N I H ++L+ SD+
Sbjct: 361 DKKSNEDTSTNFVTIKQEKELLKCLCDTLNAIAHILFLKHCRKSDR 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,629
Number of Sequences: 5004
Number of extensions: 35764
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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