Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D21
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948...    63   9e-11
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    48   3e-06
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987...    48   3e-06
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732...    44   3e-05
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972...    27   4.0  
10_08_0816 + 20789399-20789728,20790098-20790420,20791437-207915...    27   5.3  
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019...    27   7.0  

>03_02_1010 -
           13194002-13194339,13194421-13194573,13194661-13194809,
           13194932-13195184,13195282-13195469,13195684-13195841,
           13196093-13196307,13196410-13196614
          Length = 552

 Score = 62.9 bits (146), Expect = 9e-11
 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
 Frame = +2

Query: 14  RHEVGVLDPKYTSCHQ*STTRIRCSSYPVLVPKEFYPL*Y*AFNFQCT*IQRADIKSMQC 193
           ++ +GV++PK  S H    T I C S   +  +E        F+   + ++++D++  Q 
Sbjct: 93  KYSLGVVEPKVGS-HISEVTGIPCQSNEFV--QELLRGVRLHFDRFISELKKSDLEKAQL 149

Query: 194 RTTGPLDIRILEARVKCNVHRVNN-IDHTIYLRSSISSDKDVNTFSMTIREWYPYHFPEL 370
                L      A+VK NV+RV+N +   I+L  ++  DKD+N+FSM +REW+ +HFPEL
Sbjct: 150 G----LGHSYSRAKVKFNVNRVDNMVIQAIFLLDTL--DKDINSFSMRVREWFGWHFPEL 203

Query: 371 VSIVPEN 391
           V IV +N
Sbjct: 204 VKIVNDN 210


>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +2

Query: 305 DKDVNTFSMTIREWYPYHFPELVSIVPEN 391
           DK++NT++M +REWY +HFPEL  IV +N
Sbjct: 171 DKELNTYAMRVREWYGWHFPELTKIVADN 199


>03_02_0998 -
           13097675-13098079,13098307-13098441,13098522-13098722,
           13099060-13099359,13099449-13099649,13099932-13100096,
           13100170-13100349,13100896-13100937,13101040-13101117
          Length = 568

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +2

Query: 305 DKDVNTFSMTIREWYPYHFPELVSIVPEN 391
           DK++NT++M +REWY +HFPEL  IV +N
Sbjct: 171 DKELNTYAMRVREWYGWHFPELTKIVADN 199


>07_03_1578 +
           27872636-27872840,27872928-27873175,27873215-27873295,
           27873665-27873822,27874391-27874450,27874655-27874873,
           27875100-27875201,27875352-27875500,27875582-27875734,
           27875839-27876194
          Length = 576

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 21/75 (28%)
 Frame = +2

Query: 230 ARVKCNVHRVNN-IDHTIYLRSSISSDKDVNTFSMTI--------------------REW 346
           A+VK NV+RV+N +   I+L  ++  DKD+N+FSM +                    REW
Sbjct: 196 AKVKFNVNRVDNMVIQAIFLLDTL--DKDINSFSMRVSLFFPLFYAMINSGGESLPPREW 253

Query: 347 YPYHFPELVSIVPEN 391
           Y +HFPELV IV +N
Sbjct: 254 YSWHFPELVKIVNDN 268


>11_04_0454 -
           17895935-17896093,17896878-17896911,17897114-17897252,
           17897487-17897561,17897666-17897945
          Length = 228

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 322 ILHDDQRMVSISLPGAGKHS 381
           +LHD+Q ++ +   G+GKHS
Sbjct: 74  VLHDNQALILVGETGSGKHS 93


>10_08_0816 +
           20789399-20789728,20790098-20790420,20791437-20791584,
           20791679-20791711,20791879-20791950
          Length = 301

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 9   EFGTRLECWIPNIRAAISEALHAYVVRHIRC*FQRSFTHCNTEHSTSNARRY 164
           +F   L  +IP    A     H YV R  +  F   FT+C+  + T    RY
Sbjct: 220 DFPFNLTKYIPFYGGAEYHDYHHYVGRQSQSNFASVFTYCDYLYGTDKGYRY 271


>02_02_0574 -
           11701359-11701460,11701469-11701570,11701725-11701922,
           11702090-11704052,11705312-11706126
          Length = 1059

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 218 RILEARVKCNVHRVNNIDHTIYLRSSISSDKDVNTF 325
           R+L+A   C+    + +DHT+Y    +SSD     F
Sbjct: 307 RVLDAATPCS----SEVDHTVYKLQPLSSDNSKKLF 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,535,491
Number of Sequences: 37544
Number of extensions: 225578
Number of successful extensions: 474
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)