Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D21
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...    57   5e-09
AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    40   8e-04
U58727-2|AAB00582.2|  462|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    27   3.6  
AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b prot...    26   8.2  

>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score = 56.8 bits (131), Expect = 5e-09
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
 Frame = +2

Query: 230 ARVKCNVHRVNN-IDHTIYLRSSISSDKDVNTFSMTIREWYPYHFPELVSIVPE 388
           ++VK +VHRV+N +  +I L   +  DKD+N F M IREWY YH+PEL  + P+
Sbjct: 158 SKVKFDVHRVDNMVIQSIALLDQL--DKDINLFGMRIREWYSYHYPELFRLAPD 209


>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 39.5 bits (88), Expect = 8e-04
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 233 RVKCNVHRVNN-IDHTIYLRSSISSDKDVNTFSMTIREWYPYHFPELVSIVPEN 391
           +VK N  +++  I   + L   +  DK++N + M +REWY +HFPEL   + ++
Sbjct: 148 KVKFNPEKIDTMIVQAVSLLDDL--DKELNNYVMRVREWYGWHFPELGKTIQDH 199


>U58727-2|AAB00582.2|  462|Caenorhabditis elegans Hypothetical
           protein D1005.2 protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 209 LDIRILEARVKCNVHRVNNIDHTIYLRSSISSDKDVNTF 325
           +D+ +LE +  C  H   N+D  +YL +S  +D+D   +
Sbjct: 109 MDLAVLEHQKMCEAH---NVDTPLYLMNSFYTDEDTKKY 144


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 305 DKDVNTFSMTIREWYPYHFPELVSIVP 385
           D ++N     +R+ Y   FPEL ++VP
Sbjct: 113 DNEINVIHKFVRDKYEKRFPELETLVP 139


>AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b protein
           protein 46 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 278 IYLRSSISSDKDVNTFSMTIREWYPYHFPEL 370
           +YL SS+ +DKD+N F   ++ W     P+L
Sbjct: 226 VYLSSSLLTDKDINVF---LKHWLAGLKPKL 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,884,788
Number of Sequences: 27780
Number of extensions: 202285
Number of successful extensions: 467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)