Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D19
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 142 2e-35
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 142 2e-35
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 81 9e-17
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 81 9e-17
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 81 9e-17
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 50 1e-07
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 0.002
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 28 0.84
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 1.5
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 142 bits (344), Expect = 2e-35
Identities = 69/116 (59%), Positives = 79/116 (68%)
Frame = +2
Query: 5 EEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXX 184
+EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV Y+TP
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIK 92
Query: 185 XXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTM 352
LAVL+YYKV+++G + RLRREC CGA FMA +DR YCG+CH T+
Sbjct: 93 HKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCHLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 142 bits (344), Expect = 2e-35
Identities = 69/116 (59%), Positives = 79/116 (68%)
Frame = +2
Query: 5 EEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYSTPXXXX 184
+EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV Y+TP
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIK 92
Query: 185 XXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTM 352
LAVL+YYKV+++G + RLRREC CGA FMA +DR YCG+CH T+
Sbjct: 93 HKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCHLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 81.0 bits (191), Expect = 9e-17
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 5 EEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 118
+EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 81.0 bits (191), Expect = 9e-17
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 5 EEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 118
+EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 81.0 bits (191), Expect = 9e-17
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 5 EEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 118
+EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 81.0 bits (191), Expect = 9e-17
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 5 EEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 118
+EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 109 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 81.0 bits (191), Expect = 9e-17
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 5 EEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 118
+EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 185 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 81.0 bits (191), Expect = 9e-17
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 5 EEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 118
+EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 261 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 81.0 bits (191), Expect = 9e-17
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 5 EEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 118
+EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 337 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 50.4 bits (115), Expect = 1e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +2
Query: 5 EEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 118
+EGIPP QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 33 KEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 36.3 bits (80), Expect = 0.002
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 14 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 118
I ++QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 39 IEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.9 bits (59), Expect = 0.84
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -1
Query: 68 DHLPTVYRRRSIFVDQEGCP 9
DHLP+V RRRSI D G P
Sbjct: 611 DHLPSVKRRRSIANDFHGKP 630
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 1.5
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +2
Query: 221 YYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 370
Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 228 YLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,569,314
Number of Sequences: 5004
Number of extensions: 23453
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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