Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0012_D18
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 201 5e-53
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 185 2e-48
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 95 6e-21
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 86 2e-18
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 76 2e-15
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 75 4e-15
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 73 3e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 72 5e-14
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 66 2e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 61 9e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 2e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 2e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 4e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 58 8e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 54 1e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 52 3e-08
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 51 9e-08
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 51 9e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 50 1e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 49 3e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 47 1e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 47 1e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 43 2e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 40 1e-04
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 40 1e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 38 7e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 34 0.009
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.020
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 33 0.027
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 32 0.035
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 26 2.3
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 3.1
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 3.1
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 4.1
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 25 4.1
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 25 5.4
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 7.1
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 25 7.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 24 9.4
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 24 9.4
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 201 bits (490), Expect = 5e-53
Identities = 92/136 (67%), Positives = 106/136 (77%)
Frame = +2
Query: 41 KQFYIAIELEEWKLETLCDLYDTLSIAQAVIICNTRRKVDWLTESMHERDFTVSAMHGDM 220
KQFY+A+E EEWKL+TLCDLY+T+++ QAVI CNTRRKVDWLTE + ERDFTVS+MHGDM
Sbjct: 233 KQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDM 292
Query: 221 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXX 400
DQ +R+ +M +FRTGSSR+LITTDLLARGIDVQQVS VINYDLP NRENY
Sbjct: 293 DQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRF 352
Query: 401 XXXXXXXNFVTEADRR 448
NFVT D R
Sbjct: 353 GRKGVSINFVTNDDVR 368
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 185 bits (451), Expect = 2e-48
Identities = 86/136 (63%), Positives = 101/136 (74%)
Frame = +2
Query: 41 KQFYIAIELEEWKLETLCDLYDTLSIAQAVIICNTRRKVDWLTESMHERDFTVSAMHGDM 220
KQ++IA+E EEWK +TLCDLYDTL+I QAVI CN+RRKVDWLTE M E +FTV++MHG+M
Sbjct: 235 KQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEM 294
Query: 221 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXX 400
Q+ER+ IM+ FR G+SRVLI TD+ ARGIDVQQVS VINYDLP NRENY
Sbjct: 295 PQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRF 354
Query: 401 XXXXXXXNFVTEADRR 448
NFVT D R
Sbjct: 355 GRKGVAINFVTNEDVR 370
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 94.7 bits (225), Expect = 6e-21
Identities = 42/107 (39%), Positives = 69/107 (64%)
Frame = +2
Query: 41 KQFYIAIELEEWKLETLCDLYDTLSIAQAVIICNTRRKVDWLTESMHERDFTVSAMHGDM 220
KQ Y+ + EE K L +LY L+I Q++I C + + + M TV+ + G++
Sbjct: 327 KQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNL 386
Query: 221 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNR 361
+ +R+ IM FR G+S+VL+TT+++ARGIDV QV+ V+NYD+P ++
Sbjct: 387 EGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQ 433
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 86.2 bits (204), Expect = 2e-18
Identities = 45/134 (33%), Positives = 68/134 (50%)
Frame = +2
Query: 44 QFYIAIELEEWKLETLCDLYDTLSIAQAVIICNTRRKVDWLTESMHERDFTVSAMHGDMD 223
Q+Y ++ E K+ L L+ L I Q++I CN+ +V+ L + + E ++ H M
Sbjct: 258 QYYAFVD-ESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKML 316
Query: 224 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXX 403
Q R + FR G R L+ +DLL RGID+Q V+ VIN+D P N E Y
Sbjct: 317 QSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 376
Query: 404 XXXXXXNFVTEADR 445
+F++ ADR
Sbjct: 377 HRGLAISFISWADR 390
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 76.2 bits (179), Expect = 2e-15
Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +2
Query: 77 KLETLCDLYDTLSI-AQAVIICNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQ 253
K L D+ TL +I T+R D LT+ + +F +++HGD QRERE +
Sbjct: 416 KRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALEL 475
Query: 254 FRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 370
FR+G + +++ T + +RG+D+ V+ VINYDLPT+ ++Y
Sbjct: 476 FRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDY 514
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 75.4 bits (177), Expect = 4e-15
Identities = 32/83 (38%), Positives = 53/83 (63%)
Frame = +2
Query: 122 QAVIICNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 301
+ +I T+R D +T + + + A+HGD Q ER+ ++ +FRTG S +++ TD+ +
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430
Query: 302 RGIDVQQVSCVINYDLPTNRENY 370
RGIDV+ ++ V NYD P N E+Y
Sbjct: 431 RGIDVKGITHVFNYDFPGNTEDY 453
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 72.5 bits (170), Expect = 3e-14
Identities = 36/110 (32%), Positives = 62/110 (56%)
Frame = +2
Query: 41 KQFYIAIELEEWKLETLCDLYDTLSIAQAVIICNTRRKVDWLTESMHERDFTVSAMHGDM 220
+Q Y+ +E E+ K + DL D+L Q VI + + + L + E +F +HG +
Sbjct: 271 QQHYVKLE-EKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGL 329
Query: 221 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 370
Q ER + F+ R+ + TD+ RGID+++V+ VINYD+P + ++Y
Sbjct: 330 PQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSY 379
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 71.7 bits (168), Expect = 5e-14
Identities = 33/118 (27%), Positives = 60/118 (50%)
Frame = +2
Query: 80 LETLCDLYDTLSIAQAVIICNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFR 259
LE L +LY+ + ++ + + D L + +R +T +++HG DQ +R+ + ++
Sbjct: 656 LELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYK 715
Query: 260 TGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVT 433
G VLI T ++ARG+DV+ + V+NYD P + E+Y F+T
Sbjct: 716 AGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFIT 773
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 66.1 bits (154), Expect = 2e-12
Identities = 31/106 (29%), Positives = 55/106 (51%)
Frame = +2
Query: 125 AVIICNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLAR 304
A+I N R + + + + V+ +H +M QRER + +FR ++++L+ TD+ +R
Sbjct: 261 AIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASR 320
Query: 305 GIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEAD 442
G+D+ V VIN+DLP + ++Y + VTE D
Sbjct: 321 GLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 60.9 bits (141), Expect = 9e-11
Identities = 31/82 (37%), Positives = 41/82 (50%)
Frame = +2
Query: 197 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXX 376
V +HG++ Q +RE + +FR G VLI TDLLARGID V VIN+D P + +Y
Sbjct: 315 VGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
Query: 377 XXXXXXXXXXXXXXXNFVTEAD 442
F T+ D
Sbjct: 375 RIGRTGRAGNTGQAVTFFTKED 396
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 60.1 bits (139), Expect = 2e-10
Identities = 25/75 (33%), Positives = 48/75 (64%)
Frame = +2
Query: 128 VIICNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 307
++ T+ V++++E + + ++VS ++G +DQ R + FR G + +L+ TD+ +RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 308 IDVQQVSCVINYDLP 352
ID+ ++ VINYD P
Sbjct: 410 IDIPLLANVINYDFP 424
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 59.7 bits (138), Expect = 2e-10
Identities = 24/81 (29%), Positives = 47/81 (58%)
Frame = +2
Query: 128 VIICNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 307
+I N +R ++ + + ++ + +HG Q +RE + Q R ++ +L+ TD+ RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 308 IDVQQVSCVINYDLPTNRENY 370
ID+ VS V+NY++ + E+Y
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDY 600
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 58.8 bits (136), Expect = 4e-10
Identities = 31/115 (26%), Positives = 51/115 (44%)
Frame = +2
Query: 98 LYDTLSIAQAVIICNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRV 277
L + L+ +I T L + F+ +HG + Q R + +F++G+
Sbjct: 279 LVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARST 338
Query: 278 LITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXXXXXXXXXXXXXXNFVTEAD 442
L+ TD+ ARG+D+ V VINYD+PT+ + Y VT+ D
Sbjct: 339 LVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYD 393
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 57.6 bits (133), Expect = 8e-10
Identities = 28/87 (32%), Positives = 40/87 (45%)
Frame = +2
Query: 185 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRE 364
R + V +HGDM Q R + F++G VL+ TD+ ARG+D+ +V VIN P E
Sbjct: 439 RKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIE 498
Query: 365 NYXXXXXXXXXXXXXXXXXNFVTEADR 445
+Y F T D+
Sbjct: 499 DYVHRIGRTGRANTKGTAITFFTPQDK 525
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 54.0 bits (124), Expect = 1e-08
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +2
Query: 206 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYXXXXX 385
+HG + Q +R + FR G L+ TD+ +RGID++ + VINY+ P E Y
Sbjct: 534 IHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVG 593
Query: 386 XXXXXXXXXXXXNFVTEADRR 448
E DR+
Sbjct: 594 RTARAGRSGRAITLAGEGDRK 614
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 52.4 bits (120), Expect = 3e-08
Identities = 26/74 (35%), Positives = 44/74 (59%)
Frame = +2
Query: 149 RKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVS 328
R ++ + ES+++ F+ + + ER+ I+ +F TG +L+ +DL+ARGIDV
Sbjct: 449 RLLELIHESLNQ-SFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQ 507
Query: 329 CVINYDLPTNRENY 370
VINYD P + +Y
Sbjct: 508 NVINYDPPLSVRSY 521
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 50.8 bits (116), Expect = 9e-08
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Frame = +2
Query: 122 QAVIICNTRRKVDWLTESMHERDF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLI 283
+A+I C T++ V+++ +H+ D V+ GD+ ER++ FR G +R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 284 TTDLLARGIDVQQVSCVINYDLPTNRENY 370
T GI+ V V++Y LP + +Y
Sbjct: 1477 ATKAFGLGINYMGVRLVVHYGLPASSMDY 1505
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 50.8 bits (116), Expect = 9e-08
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Frame = +2
Query: 122 QAVIICNTRRKVDWLTESMHERDF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLI 283
+A+I C T++ V+++ +H+ D V+ GD+ ER++ FR G +R++I
Sbjct: 1417 RAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMI 1476
Query: 284 TTDLLARGIDVQQVSCVINYDLPTNRENY 370
T GI+ V V++Y LP + +Y
Sbjct: 1477 ATKAFGLGINYMGVRLVVHYGLPASSMDY 1505
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 50.4 bits (115), Expect = 1e-07
Identities = 23/83 (27%), Positives = 44/83 (53%)
Frame = +2
Query: 122 QAVIICNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 301
+ ++ N + +T ++E +H +DQ++R + +F+ VL+ TD+ A
Sbjct: 391 KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAA 450
Query: 302 RGIDVQQVSCVINYDLPTNRENY 370
RGID+ V+ VI+Y +P + Y
Sbjct: 451 RGIDIPSVTHVIHYHVPHTADMY 473
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 49.2 bits (112), Expect = 3e-07
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = +2
Query: 44 QFYIAIELEEWKLETLCDLYDTLSIAQAVIICNTRRKVDWLTESMHERDFTVSAMH--GD 217
QFY+ + L E KL+ L T + ++ ++ ++V ++ E+ +S +H G
Sbjct: 260 QFYLTVPLTE-KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGK 318
Query: 218 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 370
Q R + +F + VL TD++ARG+D V VI D P + + Y
Sbjct: 319 QKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTY 369
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 1e-06
Identities = 25/110 (22%), Positives = 53/110 (48%)
Frame = +2
Query: 41 KQFYIAIELEEWKLETLCDLYDTLSIAQAVIICNTRRKVDWLTESMHERDFTVSAMHGDM 220
+Q Y+ ++ ++ L L L + ++ ++ V ++ E ++ D V +HG
Sbjct: 312 EQGYVVVDSDKRFLLLFSFLKRNLK-KKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQ 370
Query: 221 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 370
Q+ R +F +L+ T++ ARG+D+ V ++ YD P + +Y
Sbjct: 371 KQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDY 420
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 47.2 bits (107), Expect = 1e-06
Identities = 24/102 (23%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Frame = +2
Query: 74 WKLETLCDLYDTLSIAQAVIICNTRRKVDWLTESM--HERDFTVSAMHGDMDQREREVIM 247
+K++ + L T+ +A++ ++ V++ ++ F + A+HG Q R
Sbjct: 242 YKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNF 301
Query: 248 RQFRTGSSR-VLITTDLLARGIDVQQVSCVINYDLPTNRENY 370
+F+ + + VL TTD+ +RG+D+ V V+ D P + +++
Sbjct: 302 EKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSF 343
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 43.2 bits (97), Expect = 2e-05
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 197 VSAMHGDMDQREREVIMRQFRTGS---SRVLITTDLLARGIDVQQVSCVINYDLPTNREN 367
V +HG + Q+ R + F + S +L+ TD+ ARG+D+ V V+ YD P + ++
Sbjct: 470 VYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDD 529
Query: 368 Y 370
Y
Sbjct: 530 Y 530
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 40.3 bits (90), Expect = 1e-04
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 206 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENY 370
+H + +R I FR S +L TD++ARG+D ++ V+ P+N ++Y
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDY 377
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 40.3 bits (90), Expect = 1e-04
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +2
Query: 128 VIICNTRRKVDWLTESMHERDFTVSAMH--GDMDQREREVIMRQFRTGSSRVLITTDLLA 301
+I C +R + + + D+ + A H +++ ER+ I ++++GS ++++ T
Sbjct: 746 IIYCLSRTSCEQVAAKLRN-DYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFG 804
Query: 302 RGIDVQQVSCVINYDLPTNRENY 370
G+D V VI++ P + E Y
Sbjct: 805 MGVDKGDVRFVIHHSFPKSLEGY 827
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 37.9 bits (84), Expect = 7e-04
Identities = 12/25 (48%), Positives = 22/25 (88%)
Frame = +2
Query: 296 LARGIDVQQVSCVINYDLPTNRENY 370
+ARG+D + V+CV+N+D+P+N ++Y
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSY 410
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.009
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 203 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNREN 367
A+ G+ + ERE +++ FR VL+ +L G D+ + C++ PT+ N
Sbjct: 294 ALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM-IARPTSSPN 347
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.1 bits (72), Expect = 0.020
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 218 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 346
M Q+ + ++QF+ G LI T + G+D+ +V +I YD
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYD 518
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 32.7 bits (71), Expect = 0.027
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 200 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 346
SA M+Q +++ + QFR G L+ T + G+D+ +I YD
Sbjct: 509 SAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYD 557
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 32.3 bits (70), Expect = 0.035
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 218 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 349
M R ++ + +F+TG VLI T + GIDV + VI +++
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNI 450
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 68 EEWKLETLCDLYDTLSIAQAVI--ICNTRRKVDW 163
+EWKL+ + D YD ++ QAV + R + DW
Sbjct: 143 DEWKLDPVYDYYD-YTLVQAVYSSLVKHREQKDW 175
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 33 ECINNSTLPLS*KNGNWKHCVIYMTHSLLHRLLLS 137
E + TLPL K G + + + SLL+ LL+S
Sbjct: 587 ESSSTLTLPLELKTGRYVDNISHFAQSLLYTLLIS 621
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 199 HGEVALMHRLGQPVYLTTGVADNNSLCNRE 110
HGE++ H+LG V G D + L N E
Sbjct: 527 HGELSSKHKLGDRVKSLFGSHDESGLRNNE 556
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 140 NTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRV 277
N ++ TES +R V + D + +R+ R+F G RV
Sbjct: 25 NNKKSRTRSTESHEDRQAKVQKIQSDFNLFDRQFTKRKFDVGGRRV 70
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 176 MHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID-VQQVSCVIN 340
+H++ V GD + + ++ + + TG +RV++TT L RG++ VQ + +++
Sbjct: 257 LHQKPHPVFERLGDDLKAKLKISLAEALTGFNRVILTT-LDGRGLEYVQPIGKILH 311
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 448 SPVRFRDKVDGNSFTAETTTSSDSMNVVFAI 356
SP+ + G SFTA T T + M+V F +
Sbjct: 93 SPLTRSRRNRGTSFTANTVTFTPGMSVAFKL 123
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 253 VPYWFVSCAHHHRPTGSRYRRAASL 327
VPY+FV C + GS+ RA+++
Sbjct: 168 VPYFFVGCKIYDWVAGSKNLRASTI 192
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 268 RTSTELPHDHLAFTLVHVTV-HGRHGEVALMHRLGQPVYLTTGVADNNSLCN 116
R+ T L + F + V V H E ++HR + + + DN SLC+
Sbjct: 75 RSLTTLGKEETDFLVDAVFVSESNHHEKEILHRTCKRYRIPLNIIDNPSLCS 126
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 14 KRRAYTGMYKQFYIAIELEEWKLETLCDLYDTLSIAQ 124
KRR Y +YK+ ++A++L + + L L L I+Q
Sbjct: 355 KRRNYIKLYKKKFLAVQLSADESKELDVLELNLDISQ 391
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 191 FTVSAMHGDMDQREREVI 244
F MHG MDQRE+ +
Sbjct: 2248 FLYGLMHGTMDQREQSAL 2265
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 55 CH*VRRMEIGNTV*FI*HTLYCTGCYYLQHPS 150
CH R+ I + T++C C ++HPS
Sbjct: 104 CHDCRKQIIDSNFKRDNRTIFCNDCKQVRHPS 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,449
Number of Sequences: 5004
Number of extensions: 33458
Number of successful extensions: 114
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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