Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D18
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       71   4e-15
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 71.3 bits (167), Expect = 4e-15
 Identities = 29/89 (32%), Positives = 55/89 (61%)
 Frame = +2

Query: 104 DTLSIAQAVIICNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLI 283
           D+ ++   ++    ++K D++   + E ++  +++HGD  QR+RE  +  F++G   +L+
Sbjct: 447 DSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILV 506

Query: 284 TTDLLARGIDVQQVSCVINYDLPTNRENY 370
            T + ARG+D++ VS VINYDLP   + Y
Sbjct: 507 ATAVAARGLDIKNVSHVINYDLPKGIDEY 535


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 236 RVHAGPCHRAW 204
           R+HA  C R W
Sbjct: 132 RIHADSCDRLW 142


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 146 RRKVDWLTESMHERDFTVSA 205
           RR++D L  S+ E +  VSA
Sbjct: 436 RRRMDKLKSSIEEANLAVSA 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,685
Number of Sequences: 438
Number of extensions: 2615
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)