Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0012_D17
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    31   0.13 
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.9  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   3.8  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   5.0  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.0  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   6.7  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   6.7  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    25   8.8  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   8.8  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 297 PIDEKAEKILKMVKAKDSYGQVMGAVQNAQAVKNQETINRPETPHDIEIAESAALGSE 470
           PI  KA    +   AKDS  Q +   Q A + K QE    P  P+D++      +G+E
Sbjct: 98  PILSKATGDKETEDAKDSSNQDISNDQKAPSFKEQEPATLPILPNDLQSIIPKGIGNE 155


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 276 SNQGLLPPIDEKAEKILKMVKAKDSYGQVMGAVQNAQAVK 395
           SN+ LL  + E+ +++L   +  DS+  ++G     QA++
Sbjct: 352 SNETLLQTLTEQTDQLLSFKETMDSFKFILGPSMENQALQ 391


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/64 (20%), Positives = 31/64 (48%)
 Frame = -2

Query: 443 YLNVMGSFGPVNGFLIFYCLSILYGTHNLTIAIFRLYHFKYFFSFLIYGWQETLIR*EHI 264
           Y++ + +      FL++  L+++Y  +     +FR+   KYF     +GW+  +     +
Sbjct: 164 YMSGISNIPAFQTFLVYALLTLVYTPYT----VFRMGFKKYFEMIFRHGWKYIIFAFFDV 219

Query: 263 MGSF 252
            G++
Sbjct: 220 EGNY 223


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 392 YCLSILYGTHNLTIAIFRLYHFKYFFSFL 306
           YCL+  YG    T +I +L  +  F  F+
Sbjct: 17  YCLNAKYGQRYATFSILKLVEYNCFPGFI 45


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 201 SDDVIKHSVHTLVFRSLKRSHDMFLSNQGL 290
           S D  K S H+ V + L    D FL N+G+
Sbjct: 327 SKDPKKRSTHSYVAKILNPEWDAFLKNEGV 356


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 418 PKLPMTLR*QNQQPWVRKAWLYHILVRHC 504
           PK P  ++   +QPW  + W  H+   HC
Sbjct: 42  PKAPKHIQ---EQPWTMQNWWRHLNWLHC 67


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 212 NVVAHFDLLRRISFFCIIT 156
           N+  HF L  R++ FC++T
Sbjct: 468 NIERHFRLFIRLALFCVLT 486


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 422 FGPVNGFLIFYCLSILYGTHNLTIAIFRL 336
           FG V G L+ Y L  ++G H+L I ++RL
Sbjct: 227 FGFVVGALVPYILVCIFGEHHLRI-VWRL 254


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 347 IFRLYHFKYFFSFLIYGW 294
           I  L+H +Y FSF+   W
Sbjct: 291 ILTLFHMEYLFSFVASSW 308


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 84  HEITERHMTHFTS*FLALYLLPHSYLV 4
           H +TE H        L  Y+LP SY V
Sbjct: 108 HALTENHHVFVNCSTLKFYVLPESYQV 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,271
Number of Sequences: 5004
Number of extensions: 43182
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)